LXL04_006326 | RubberDandelionOmics

Gene overview

LXL04_006326

Reference: OH-1004 Chr: Chr02 Coordinates: 6989442-6995321 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2283 bp · LXL04_006326|LXL04_006326|OH1004|cDNA

ATGATACTATCTGCTCTTTTGACTTCTGTCGGAATAAACTTTGGCTTATGTTTATTATTCTTCACTCTATACTCCATATTAAGGAAGCAACCAATCAATGCTGATGTTTATGCACCACGGATAGTTGCTGAAGGAAAAAATGATCAAAGTAGTGATTTCAATTTGGAAAGGCTACTGCCTTCTACCAGTTGGGTTTCAAGGGCATGGAATCCCTCAGAAGATGAACTTCTCATGTGTGCAGGTTTAGATGGAGTTGTCTT...

CDS

Download CDS FASTA

2283 bp · LXL04_006326|LXL04_006326|OH1004|CDS

ATGATACTATCTGCTCTTTTGACTTCTGTCGGAATAAACTTTGGCTTATGTTTATTATTCTTCACTCTATACTCCATATTAAGGAAGCAACCAATCAATGCTGATGTTTATGCACCACGGATAGTTGCTGAAGGAAAAAATGATCAAAGTAGTGATTTCAATTTGGAAAGGCTACTGCCTTCTACCAGTTGGGTTTCAAGGGCATGGAATCCCTCAGAAGATGAACTTCTCATGTGTGCAGGTTTAGATGGAGTTGTCTT...

Protein

Download Protein FASTA

760 aa · LXL04_006326|LXL04_006326|OH1004|PROTEIN

MILSALLTSVGINFGLCLLFFTLYSILRKQPINADVYAPRIVAEGKNDQSSDFNLERLLPSTSWVSRAWNPSEDELLMCAGLDGVVFMRIFTFSLKVFSFAGVVGLCALLPINYMGSQIFIDFSDFTNKSLESFSISNVNDGSQRLWIHFGAVYAFTAFVCYLLYVEYNSISLKRLAFYSSSTPKPNEFTVLVRGIPKSPTDTLSETVEKFFSEYYPSVYLSHYMVYHTSKIWKIMNEADKICKRLAYLKSTKERSQRFG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_006326`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_006326

Location Chr02:6989442-6995321 (+)

Description Similar to HYP1: CSC1-like protein HYP1

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g01100`	Acts as an osmosensitive calcium-permeable cation channel.	No verified direct reference in this release
`At1g69450`	Acts as an osmosensitive calcium-permeable cation channel.	No verified direct reference in this release
`At1g58520`	Acts as an osmosensitive calcium-permeable cation channel.	No verified direct reference in this release
`At1g10090`	Acts as an osmosensitive calcium-permeable cation channel.	No verified direct reference in this release
`At4g22120`	Acts as an osmosensitive calcium-permeable cation channel.	OSCA/TMEM63 are an Evolutionarily Conserved Family of Mechanically Activated Ion Channels.2018 · DOI: 10.7554/elife.41844 Structure-guided mutagenesis of OSCAs reveals differential activation to mechanical stimuli.2024 · DOI: 10.7554/elife.93147

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_006326 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006812 monoatomic cation transport Biological Process

GO:0007231 osmosensory signaling pathway Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0005227 calcium-activated cation channel activity Molecular Function

GO:0008381 mechanosensitive monoatomic ion channel activity Molecular Function

GO:0042802 identical protein binding Molecular Function

KEGG gene cross-reference

ath:AT1G10090

ath:AT1G58520

ath:AT1G69450

ath:AT3G01100

ath:AT4G22120

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.456

Rank 1 · LXL04_006326 · OH-1004

Lysosome / Vacuole0.231

Rank 2 · LXL04_006326 · OH-1004

Cytoplasm0.162

Rank 3 · LXL04_006326 · OH-1004

Endoplasmic reticulum0.151

Rank 4 · LXL04_006326 · OH-1004

Golgi apparatus0.094

Rank 5 · LXL04_006326 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13967.12RSN1_TM5-166 aa

PF14703.13PHM7_cyt189-343 aa

PF02714.21RSN1_7TM357-585 aa

PF02714.21RSN1_7TM631-668 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_006326	`PF13967.12`	RSN1_TM	5	166	1.3e-38	132.8
LXL04_006326	`PF14703.13`	PHM7_cyt	189	343	1e-39	137.3
LXL04_006326	`PF02714.21`	RSN1_7TM	357	585	9e-68	229.3
LXL04_006326	`PF02714.21`	RSN1_7TM	631	668	9e-68	229.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8GUH7`	Arabidopsis thaliana	Hyperosmolality-gated Ca2+ permeable channel 2.3	57.507%	Swiss-Prot	strong database homology
`F4I248`	Arabidopsis thaliana	Hyperosmolality-gated Ca2+ permeable channel 2.4	49.541%	Swiss-Prot	moderate database homology
`F4IBD7`	Arabidopsis thaliana	Hyperosmolality-gated Ca2+ permeable channel 2.1	40.741%	Swiss-Prot	moderate database homology
`Q94A87`	Arabidopsis thaliana	Hyperosmolality-gated Ca2+ permeable channel 2.2	40.650%	Swiss-Prot	moderate database homology
`Q5XEZ5`	Arabidopsis thaliana	Hyperosmolality-gated Ca2+ permeable channel 1.2	32.546%	Swiss-Prot	moderate database homology

JBrowse

View in Genome Browser

Gene Card