TkA01G030140 | RubberDandelionOmics

Gene overview

TkA01G030140

Reference: TK1151 Chr: Chr01 Coordinates: 7721937-7731355 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1503 bp · TkA01G030140|TK1151|cDNA

AAAAAATAGCAAATGCTCTGTTATCATCACCATCATCTTGTTCTTCAATCGTATATGTATAGTGAACTTTTATGGAAGGAGACCGCAGACTTCGAGCAAGTGGACATTTCCTCTCATATATTTATCCAACGCATCCAGTAGTAGACTTGCAGGCAAGCCTCTTCTTCAACGACCTTCATCTCTCTCTCTCTCTCTCGATTGATATGTATCCTACCTCCAATTCATCTTCTGCATCTCAGGCATCAAGAGATCCCAACGGC...

CDS

Download CDS FASTA

1095 bp · TkA01G030140|TK1151|CDS

ATGGAAGGAGACCGCAGACTTCGAGCAAGTGGACATTTCCTCTCATATATTTATCCAACGCATCCAGTAGTAGACTTGCAGGCAAGCCTCTTCTTCAACGACCTTCATCTCTCTCTCTCTCTCTCGATTGATATGTATCCTACCTCCAATTCATCTTCTGCATCTCAGGCATCAAGAGATCCCAACGGCGGCGTCAATGGCAGCAACACCGGCGGTGGGGGAGGAGGAGGAGGAGTACAAGGCCTCGCTCGCTACCGTTC...

Protein

Download Protein FASTA

364 aa · TkA01G030140|TK1151|PROTEIN

MEGDRRLRASGHFLSYIYPTHPVVDLQASLFFNDLHLSLSLSIDMYPTSNSSSASQASRDPNGGVNGSNTGGGGGGGGVQGLARYRSAPVSFLTTTVDSVINGQTQQQTVGNHMVGGGGGGNGSTPTRFYSPPDSTSSQSQLSSSISTGDHHRLQTTSFRLNEFATAFSGITSAPQNPSPLFRHGSSPAGFLNTLVSSTPNDGRGSRLGSQLSFTGTSSYSQLSDEDDITHSLMFASSSQNKRAKTDNNGLNIMESELNF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G030140`
TK1151 ID	TkA01G030140
OH-1004 ID	LXL04_012988
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	61.000
Protein coverage (%)	TK1151 27.473 / OH-1004 23.077 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G030140

Location Chr01:7721937-7731355 (-)

Description Similar to BHLH122: Transcription factor bHLH122

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g05805`	Transcription factor bHLH128.	No verified direct reference in this release
`At2g43140`	Transcription factor bHLH129.	No verified direct reference in this release
`At2g42280`	Transcription factor bHLH130.	No verified direct reference in this release
`At1g35460`	Transcription factor bHLH80.	No verified direct reference in this release
`At1g51140`	Transcription factor bHLH122.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012988 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0006357 regulation of transcription by RNA polymerase II Biological Process

GO:0006808 regulation of nitrogen utilization Biological Process

GO:0006970 response to osmotic stress Biological Process

GO:0007623 circadian rhythm Biological Process

GO:0009408 response to heat Biological Process

GO:0009409 response to cold Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009416 response to light stimulus Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0010119 regulation of stomatal movement Biological Process

KEGG gene cross-reference

ath:AT1G05805

ath:AT1G35460

ath:AT1G51140

ath:AT2G42280

ath:AT4G09180

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.968

Rank 1 · TkA01G030140 · TK1151

Cytoplasm0.126

Rank 2 · TkA01G030140 · TK1151

Cell membrane0.025

Rank 3 · TkA01G030140 · TK1151

Endoplasmic reticulum0.015

Rank 4 · TkA01G030140 · TK1151

Plastid0.010

Rank 5 · TkA01G030140 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10600PDZ_assoc130-148 aa

PF10600PDZ_assoc217-240 aa

PF00010HLH299-344 aa

PF23176bHLH_LHW306-348 aa

PF10600PDZ_assoc324-340 aa

PF28743IPGAL2_N329-356 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G030140	`PF10600`	PDZ_assoc	130	148	2.1	9.6
TkA01G030140	`PF10600`	PDZ_assoc	217	240	2.1	9.6
TkA01G030140	`PF00010`	HLH	299	344	8.2e-09	35.9
TkA01G030140	`PF23176`	bHLH_LHW	306	348	0.077	13.7
TkA01G030140	`PF10600`	PDZ_assoc	324	340	2.1	9.6
TkA01G030140	`PF28743`	IPGAL2_N	329	356	0.23	12.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8H102`	Arabidopsis thaliana	sp\|Q8H102\|BH128_ARATH Transcription factor bHLH128	39.900%	Swiss-Prot	Medium
`Q9ZW81`	Arabidopsis thaliana	sp\|Q9ZW81\|BH129_ARATH Transcription factor bHLH129	43.000%	Swiss-Prot	Low
`Q66GR3`	Arabidopsis thaliana	sp\|Q66GR3\|BH130_ARATH Transcription factor bHLH130	62.900%	Swiss-Prot	Low
`Q9C8P8`	Arabidopsis thaliana	sp\|Q9C8P8\|BH080_ARATH Transcription factor bHLH80	42.900%	Swiss-Prot	Low
`Q9C690`	Arabidopsis thaliana	sp\|Q9C690\|BH122_ARATH Transcription factor bHLH122	69.600%	Swiss-Prot	Low

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