RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G024000
Reference: TK1151 Chr: Chr01 Coordinates: 6185775-6187339 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1161 bp · TkA01G024000|TK1151|cDNA

TGGGTTTCTTGATAGATAAACGAACATTTTGAGAAACTGTTCTCTCAATGGCCTTCCTCACTCATTTTCCCGTTGCTCCGATTCACCATCAGTCCTCTTCCCTCTTCACCAGATTCTTCCTTTCTCCCAAACCCAAAACCCTCTTAATATTCTCCTCACTTTCCCCACCTAACTTCTCTTCAACATCCACAATAATACCCTCTTCTTCTCTCGCAACTGTCGAAGAAATCTCACTTCCAGAAGAAACTCCCTTACAAATT...

CDS

Download CDS FASTA

939 bp · TkA01G024000|TK1151|CDS

ATGGCCTTCCTCACTCATTTTCCCGTTGCTCCGATTCACCATCAGTCCTCTTCCCTCTTCACCAGATTCTTCCTTTCTCCCAAACCCAAAACCCTCTTAATATTCTCCTCACTTTCCCCACCTAACTTCTCTTCAACATCCACAATAATACCCTCTTCTTCTCTCGCAACTGTCGAAGAAATCTCACTTCCAGAAGAAACTCCCTTACAAATTGCCCGAGAAAAGCTTTTTATTCCTCCAGACACAGAAATATCGTCAGA...

Protein

Download Protein FASTA

312 aa · TkA01G024000|TK1151|PROTEIN

MAFLTHFPVAPIHHQSSSLFTRFFLSPKPKTLLIFSSLSPPNFSSTSTIIPSSSLATVEEISLPEETPLQIAREKLFIPPDTEISSEKPPRILKGSNILVSKYARDAQIVSAEFVKSSVETEACPSDGSPEFALVGRSNVGKSSLLNSIVKRKKLALTSKKPGKTQCINHFRINDSWYLVDLPGYGYASAPHELKQDWNKFTKDYFLNRSTLVSVFLLIDASIPAKKIDLEYASWLGQNQVPMTLIFTKCDKRKKKKNGG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA01G024000
TK1151 IDTkA01G024000
OH-1004 IDLXL04_005678
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.400
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G024000
LocationChr01:6185775-6187339 (-)
DescriptionSimilar to EMB2001: GTP-binding protein At2g22870
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g22870 GTP-binding protein At2g22870. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_005678 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009507 chloroplast Cellular Component
GO:0005525 GTP binding Molecular Function
GO:0046872 metal ion binding Molecular Function
KEGG gene cross-reference
ath:AT2G22870
bfr:BF2048
bfs:BF9343_2016
bth:BT_1083
bvu:BVU_2968
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.606
Rank 1 · TkA01G024000 · TK1151
Mitochondrion0.378
Rank 2 · TkA01G024000 · TK1151
Nucleus0.050
Rank 3 · TkA01G024000 · TK1151
Cytoplasm0.034
Rank 4 · TkA01G024000 · TK1151
Cell membrane0.009
Rank 5 · TkA01G024000 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF09439SRPRB129-228 aa
PF00009GTP_EFTU131-154 aa
PF01926MMR_HSR1132-249 aa
PF02421FeoB_N132-257 aa
PF03193RsgA_GTPase133-184 aa
PF00350Dynamin_N133-170 aa
PF00071Ras133-152 aa
PF08477Roc133-154 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G024000PF09439SRPRB1292280.02414.7
TkA01G024000PF00009GTP_EFTU1311540.003217.8
TkA01G024000PF01926MMR_HSR11322494.8e-1969.3
TkA01G024000PF02421FeoB_N1322572.7e-0627.7
TkA01G024000PF03193RsgA_GTPase1331842.6e-0524.9
TkA01G024000PF00350Dynamin_N1331700.0001622.5
TkA01G024000PF00071Ras1331520.07213.4
TkA01G024000PF08477Roc1331540.08413.8
TkA01G024000PF04548AIG11341590.0214.9
TkA01G024000PF00350Dynamin_N1772230.0001622.5
TkA01G024000PF08477Roc2032510.08413.8
TkA01G024000PF00009GTP_EFTU2143020.003217.8
TkA01G024000PF03193RsgA_GTPase2372972.6e-0524.9
TkA01G024000PF00071Ras2382570.07213.4
TkA01G024000PF00350Dynamin_N2412740.0001622.5
TkA01G024000PF04548AIG12412730.0214.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O81004Arabidopsis thalianasp|O81004|Y2287_ARATH GTP-binding protein At2g2287053.500%Swiss-ProtHigh

JBrowse

View in Genome Browser