RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G011780
Reference: TK1151 Chr: Chr01 Coordinates: 3135459-3138157 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

750 bp · TkA01G011780|TK1151|cDNA

ATGGACTGGGCAGCGCTTTGGGCTTCTGGTTCGTGGGCTACTGGTTGGCCTGGTGGGCTTGCGTCACTACGGATTAATCATGGAATAGAAGTGGAGATTGTTGGTCAAAAGCAAAAGATGGCACTAACCATGAAAAAGGCCCGGCTGACCCAGTGCGCGGCCGCACGTCCTACTGCGCGCCCGCGCAGATGGATAGCAACGCCCTATCATCCACAAACGAGTGGACAAGTGGAAGTGTCTAATAGGGAAATCAAACGCAT...

CDS

Download CDS FASTA

750 bp · TkA01G011780|TK1151|CDS

ATGGACTGGGCAGCGCTTTGGGCTTCTGGTTCGTGGGCTACTGGTTGGCCTGGTGGGCTTGCGTCACTACGGATTAATCATGGAATAGAAGTGGAGATTGTTGGTCAAAAGCAAAAGATGGCACTAACCATGAAAAAGGCCCGGCTGACCCAGTGCGCGGCCGCACGTCCTACTGCGCGCCCGCGCAGATGGATAGCAACGCCCTATCATCCACAAACGAGTGGACAAGTGGAAGTGTCTAATAGGGAAATCAAACGCAT...

Protein

Download Protein FASTA

249 aa · TkA01G011780|TK1151|PROTEIN

MDWAALWASGSWATGWPGGLASLRINHGIEVEIVGQKQKMALTMKKARLTQCAAARPTARPRRWIATPYHPQTSGQVEVSNREIKRILEKTVRPDRKDWSLRLDDALWAYRTAYKTPIGMSPYRLVYGKPCHLPVELEHRAMWAIKNANCELSDAGTERKLQLMELEEIRREAYESSRIYKEKTKDFHDRHIVQNPFGLSGCGLIYFVGNIAQYCEVKTLQTRVVEPLYLLYFVGTLFNTVWETPYKYE

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA01G011780
TK1151 IDTkA01G011780
OH-1004 IDLXL04_038136
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)95.600
Protein coverage (%)TK1151 54.217 / OH-1004 6.716
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G011780
LocationChr01:3135459-3138157 (-)
DescriptionSimilar to TY3B-G: Transposon Ty3-G Gag-Pol polyprotein (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_038136 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006281 DNA repair Biological Process
GO:0006310 DNA recombination Biological Process
GO:0006313 DNA transposition Biological Process
GO:0006508 proteolysis Biological Process
GO:0015074 DNA integration Biological Process
GO:0075523 viral translational frameshifting Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0042575 DNA polymerase complex Cellular Component
GO:0003676 nucleic acid binding Molecular Function
GO:0003677 DNA binding Molecular Function
GO:0003723 RNA binding Molecular Function
KEGG gene cross-reference
sce:YGR109W-B
sce:YIL082W-A
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.421
Rank 1 · TkA01G011780 · TK1151
Nucleus0.328
Rank 2 · TkA01G011780 · TK1151
Mitochondrion0.165
Rank 3 · TkA01G011780 · TK1151
Cell membrane0.051
Rank 4 · TkA01G011780 · TK1151
Plastid0.051
Rank 5 · TkA01G011780 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser