TkA01G006220 | RubberDandelionOmics

Gene overview

TkA01G006220

Reference: TK1151 Chr: Chr01 Coordinates: 1597792-1598720 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

745 bp · TkA01G006220|TK1151|cDNA

ATGTGCCCTCGACAAGAAATACGGAACGGATCCAGAACTAATCGCGCCACTGAAAAGGGCTACTGGAAAACCACTGGAAAAGATCGAGCGGTCCACCATAGGTCCCAACTGGTGGGGATTAAGAAAACTCTCGTCTACCACAGGGGTCGTGCTCCAAAAGGCGAGAGAACAAATTGGGTCATGCATGAATACAGACTCATCGATGAAGAGCTCGAAAAAGATGGAATTACACAGGATGCATTTGTTCTGTGTAGAATCTT...

CDS

Download CDS FASTA

579 bp · TkA01G006220|TK1151|CDS

ATGTGCCCTCGACAAGAAATACGGAACGGATCCAGAACTAATCGCGCCACTGAAAAGGGCTACTGGAAAACCACTGGAAAAGATCGAGCGGTCCACCATAGGTCCCAACTGGTGGGGATTAAGAAAACTCTCGTCTACCACAGGGGTCGTGCTCCAAAAGGCGAGAGAACAAATTGGGTCATGCATGAATACAGACTCATCGATGAAGAGCTCGAAAAAGATGGAATTACACAGGATGCATTTGTTCTGTGTAGAATCTT...

Protein

Download Protein FASTA

192 aa · TkA01G006220|TK1151|PROTEIN

MCPRQEIRNGSRTNRATEKGYWKTTGKDRAVHHRSQLVGIKKTLVYHRGRAPKGERTNWVMHEYRLIDEELEKDGITQDAFVLCRIFRNSGSGPKNGEKYGAPFIEEEWEDEDESVVVFKQEDFTEELPVDEDSYLDANDNQQILHTDMPVEDIPDEPTADKTAESNKSSDPEEPNNVIGETQHTSQHCCFL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G006220`
TK1151 ID	TkA01G006220
OH-1004 ID	LXL04_022093
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	90.100
Protein coverage (%)	TK1151 89.062 / OH-1004 35.205 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G006220

Location Chr01:1597792-1598720 (+)

Description Similar to NAC078: NAC domain-containing protein 78

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g10500`	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP).	A NAC transcription factor NTL4 promotes reactive oxygen species production during drought-induced leaf senescence in Arabidopsis.2012 · DOI: 10.1111/j.1365-313x.2012.04932.x The Arabidopsis NAC transcription factor NTL4 participates in a positive feedback loop that induces programmed cell death under heat stress conditions.2014 · DOI: 10.1016/j.plantsci.2014.07.003
`At5g04410`	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity).	No verified direct reference in this release
`At1g32870`	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP).	No verified direct reference in this release
`At1g34190`	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP).	A membrane-bound NAC transcription factor, ANAC017, mediates mitochondrial retrograde signaling in Arabidopsis.2013 · DOI: 10.1105/tpc.113.113985
`At5g09330`	Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022093 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0009644 response to high light intensity Biological Process

GO:0009819 drought recovery Biological Process

GO:0009908 flower development Biological Process

GO:0009962 regulation of flavonoid biosynthetic process Biological Process

GO:0010150 leaf senescence Biological Process

GO:0010228 vegetative to reproductive phase transition of meristem Biological Process

GO:0045814 negative regulation of gene expression, epigenetic Biological Process

GO:0045892 negative regulation of DNA-templated transcription Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0048573 photoperiodism, flowering Biological Process

KEGG gene cross-reference

ath:AT3G10480

ath:AT3G10500

ath:AT5G04410

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.864

Rank 1 · TkA01G006220 · TK1151

Cytoplasm0.209

Rank 2 · TkA01G006220 · TK1151

Cell membrane0.074

Rank 3 · TkA01G006220 · TK1151

Endoplasmic reticulum0.045

Rank 4 · TkA01G006220 · TK1151

Extracellular0.023

Rank 5 · TkA01G006220 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02365NAM2-66 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G006220	`PF02365`	NAM	2	66	9.6e-20	72.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q949N0`	Arabidopsis thaliana	sp\|Q949N0\|NAC53_ARATH NAC domain-containing protein 53	72.300%	Swiss-Prot	Medium
`Q84K00`	Arabidopsis thaliana	sp\|Q84K00\|NAC78_ARATH NAC domain-containing protein 78	66.700%	Swiss-Prot	Medium
`F4IED2`	Arabidopsis thaliana	sp\|F4IED2\|NAC13_ARATH NAC domain-containing protein 13	63.500%	Swiss-Prot	Medium
`Q9XIC5`	Arabidopsis thaliana	sp\|Q9XIC5\|NAC17_ARATH NAC domain-containing protein 17	57.800%	Swiss-Prot	Medium
`Q9FY82`	Arabidopsis thaliana	sp\|Q9FY82\|NAC82_ARATH NAC domain-containing protein 82	57.000%	Swiss-Prot	Medium

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