LXL04_039287 | RubberDandelionOmics

Gene overview

LXL04_039287

Reference: OH-1004 Chr: Chr09 Coordinates: 64603647-64632339 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

24096 bp · LXL04_039287|LXL04_039287|OH1004|cDNA

ATGCTCGAAAATATGAGtttttggaccaaaattgtTAAATTCTTAAAATTTCGGATCCAAAACTGTAACTTTCTGTATGGGGACCAGATTTGCAAAGATATCTCCTTCTTTGTTTGCTATCCGGTACATTATAGTAAAAAAAGGAGACCTATCTGCTGGAAATGggctaaaaatgttaaaaaacTGAAAAGATGGGGGTTAAATGATCTTTTATGTGAGATTCTGCTTCGGACAGCTACAGGCCTTAAATTAAAGGGGCA...

CDS

Download CDS FASTA

24096 bp · LXL04_039287|LXL04_039287|OH1004|CDS

ATGCTCGAAAATATGAGTTTTTGGACCAAAATTGTTAAATTCTTAAAATTTCGGATCCAAAACTGTAACTTTCTGTATGGGGACCAGATTTGCAAAGATATCTCCTTCTTTGTTTGCTATCCGGTACATTATAGTAAAAAAAGGAGACCTATCTGCTGGAAATGGGCTAAAAATGTTAAAAAACTGAAAAGATGGGGGTTAAATGATCTTTTATGTGAGATTCTGCTTCGGACAGCTACAGGCCTTAAATTAAAGGGGCA...

Protein

Download Protein FASTA

8031 aa · LXL04_039287|LXL04_039287|OH1004|PROTEIN

MLENMSFWTKIVKFLKFRIQNCNFLYGDQICKDISFFVCYPVHYSKKRRPICWKWAKNVKKLKRWGLNDLLCEILLRTATGLKLKGQLHHLSYSGTNLQQWVRKHQINQGYILLGGHFGQSLDKEIKTWLKDPKRILDTRFSVGYLSCKREQHGKSLIASGSKEQKDHFCENFVHGATHCDRTLWSYYIDDLKCKKHSWKTTIWNSLRLFCANYFDGQLRDKGLKRTNKKRFSVGFSGFICTILGYKGCWDYYCKFLWSF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_039287`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_039287

Location Chr09:64603647-64632339 (-)

Description Similar to LINE-1 retrotransposable element ORF2 protein

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g65750`	Putative ribonuclease H protein At1g65750.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_039287 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006310 DNA recombination Biological Process

GO:0032197 retrotransposition Biological Process

GO:0090304 nucleic acid metabolic process Biological Process

GO:0003723 RNA binding Molecular Function

GO:0003964 RNA-directed DNA polymerase activity Molecular Function

GO:0004519 endonuclease activity Molecular Function

GO:0009036 type II site-specific deoxyribonuclease activity Molecular Function

GO:0016787 hydrolase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.435

Rank 1 · LXL04_039287 · OH-1004

Nucleus0.302

Rank 2 · LXL04_039287 · OH-1004

Cell membrane0.141

Rank 3 · LXL04_039287 · OH-1004

Mitochondrion0.094

Rank 4 · LXL04_039287 · OH-1004

Plastid0.066

Rank 5 · LXL04_039287 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14111.13DUF42831836-1910 aa

PF00078.33RVT_12777-3032 aa

PF13966.12zf-RVT3293-3377 aa

PF14111.13DUF42834299-4374 aa

PF00078.33RVT_15260-5515 aa

PF13966.12zf-RVT5776-5860 aa

PF14111.13DUF42837564-7639 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_039287	`PF14111.13`	DUF4283	1836	1910	4.9e-30	103.8
LXL04_039287	`PF00078.33`	RVT_1	2777	3032	2.9e-77	259.8
LXL04_039287	`PF13966.12`	zf-RVT	3293	3377	2.8e-38	131.1
LXL04_039287	`PF14111.13`	DUF4283	4299	4374	4.9e-30	103.8
LXL04_039287	`PF00078.33`	RVT_1	5260	5515	2.9e-77	259.8
LXL04_039287	`PF13966.12`	zf-RVT	5776	5860	2.8e-38	131.1
LXL04_039287	`PF14111.13`	DUF4283	7564	7639	4.9e-30	103.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P0C2F6`	Arabidopsis thaliana	Putative ribonuclease H protein At1g65750	26.087%	Swiss-Prot	weak database homology

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