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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_038926
Reference: OH-1004 Chr: Chr09 Coordinates: 53515642-53523815 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4347 bp · LXL04_038926|LXL04_038926|OH1004|cDNA

ATGGCTCAGTTAGTTGGTTCCGAAGAGATAGAGTCTCTAAGATATGAGCTTTCGGAGATCGGAAGAAGTATAAGATCATCATTTCGTCGTCATACATCCAGTTTTCGTACAAATTCAGAAATAAGTTGTGCAAATGATCAAGAAGAGGCAGATAAGAATCTTCTAGAGTGGGCAGCAATCGATAGATTGCCAACATTTGAACGTTTGAGATCATCTTTGTTTGATGAAGAAAATGGAGATGGAGATAATGGTGGAGGAAA...

CDS

Download CDS FASTA

4347 bp · LXL04_038926|LXL04_038926|OH1004|CDS

ATGGCTCAGTTAGTTGGTTCCGAAGAGATAGAGTCTCTAAGATATGAGCTTTCGGAGATCGGAAGAAGTATAAGATCATCATTTCGTCGTCATACATCCAGTTTTCGTACAAATTCAGAAATAAGTTGTGCAAATGATCAAGAAGAGGCAGATAAGAATCTTCTAGAGTGGGCAGCAATCGATAGATTGCCAACATTTGAACGTTTGAGATCATCTTTGTTTGATGAAGAAAATGGAGATGGAGATAATGGTGGAGGAAA...

Protein

Download Protein FASTA

1448 aa · LXL04_038926|LXL04_038926|OH1004|PROTEIN

MAQLVGSEEIESLRYELSEIGRSIRSSFRRHTSSFRTNSEISCANDQEEADKNLLEWAAIDRLPTFERLRSSLFDEENGDGDNGGGKKVVDVTKLLPPERHMFMEKLIKHIENDNLQLLQKLRKRTDKVGVQLPTVEVRYKNLRVEAECEVVHGKPLPTLWNSLQSMLSDIVIIPGLKSKRAKITIINDVTGVVKPGRMTLLLGPPGCGKTTLLKALSGNLNKSLKLSGEISYNGYKLDQFVPQKTSAYISQNDLHIPEM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_038926
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_038926
LocationChr09:53515642-53523815 (+)
DescriptionSimilar to PDR3: Pleiotropic drug resistance protein 3
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g53480 Together with ABCG36, regulates auxin homeostasis and responses by playing a dual role in coumarin (and derivatives) and in the auxin precursor indole 3-butyric acid (IBA) efflux transport, thus influencing roots and root hairs development.
Arabidopsis PIS1 encodes the ABCG37 transporter of auxinic compounds including the auxin precursor indole-3-butyric acid.2010 · DOI: 10.1073/pnas.1005878107
Involvement of the ABCG37 transporter in secretion of scopoletin and derivatives by Arabidopsis roots in response to iron deficiency.2014 · DOI: 10.1111/nph.12471
Arabidopsis Transporter ABCG37/PDR9 contributes primarily highly oxygenated Coumarins to Root Exudation.2017 · DOI: 10.1038/s41598-017-03250-6
At2g37280 May be a general defense protein. No verified direct reference in this release
At4g15215 May be a general defense protein. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os02g0528900 May be a general defense protein. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_038926 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0009734 auxin-activated signaling pathway Biological Process
GO:0009804 coumarin metabolic process Biological Process
GO:0009926 auxin polar transport Biological Process
GO:0010164 response to cesium ion Biological Process
GO:0018901 2,4-dichlorophenoxyacetic acid metabolic process Biological Process
GO:0048364 root development Biological Process
GO:0055085 transmembrane transport Biological Process
GO:0071366 cellular response to indolebutyric acid stimulus Biological Process
GO:0140352 export from cell Biological Process
GO:0140964 intracellular auxin homeostasis Biological Process
GO:1990641 response to iron ion starvation Biological Process
GO:1990748 cellular detoxification Biological Process
KEGG gene cross-reference
ath:AT2G37280
ath:AT3G53480
ath:AT4G15215
dosa:Os02g0528900
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.539
Rank 1 · LXL04_038926 · OH-1004
Lysosome / Vacuole0.166
Rank 2 · LXL04_038926 · OH-1004
Endoplasmic reticulum0.160
Rank 3 · LXL04_038926 · OH-1004
Cytoplasm0.115
Rank 4 · LXL04_038926 · OH-1004
Golgi apparatus0.083
Rank 5 · LXL04_038926 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00005.34ABC_tran188-369 aa
PF19055.7ABC2_membrane_7402-455 aa
PF01061.30ABC2_membrane523-734 aa
PF08370.17PDR_assoc739-797 aa
PF00005.34ABC_tran876-1028 aa
PF19055.7ABC2_membrane_71057-1120 aa
PF01061.30ABC2_membrane1174-1387 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_038926PF00005.34ABC_tran1883695.4e-41141.1
LXL04_038926PF19055.7ABC2_membrane_74024551.1e-1764.8
LXL04_038926PF01061.30ABC2_membrane5237342.3e-97325.4
LXL04_038926PF08370.17PDR_assoc7397971.1e-2177.1
LXL04_038926PF00005.34ABC_tran87610285.4e-41141.1
LXL04_038926PF19055.7ABC2_membrane_7105711201.1e-1764.8
LXL04_038926PF01061.30ABC2_membrane117413872.3e-97325.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LFH0Arabidopsis thalianaABC transporter G family member 3765.522%Swiss-Protstrong database homology
Q9ZUT8Arabidopsis thalianaABC transporter G family member 3364.463%Swiss-Protstrong database homology
Q7PC83Arabidopsis thalianaABC transporter G family member 4158.865%Swiss-Protstrong database homology
Q8GU83Oryza sativa subsp. japonicaABC transporter G family member 4160.539%Swiss-Protstrong database homology

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