Gene Card
Gene overview
cDNA / CDS / Protein Sequences
636 bp · LXL04_038695|LXL04_038695|OH1004|cDNA
ATGACACATTTAAAGCTCCACATCCTAGTTAAATCTTTTAGAACACCCAGAAAGATAATACACGAAAAGATGGGTGACACCAATAATGTGAATCTGCCACCTGGTTTTCGATTCTGTCCTACAGACGAAGAACTTGTGGTCCATTTTCTTCAACGCAAGGCCTCTCTCTTGCCTTTCCACCCCGACATCATCCCCGATCTTGATCTTTATCCTTATGATCCTTGGAACTTAGATGGTAAAGCTATGGTGGAAGGGAAGAA...
636 bp · LXL04_038695|LXL04_038695|OH1004|CDS
ATGACACATTTAAAGCTCCACATCCTAGTTAAATCTTTTAGAACACCCAGAAAGATAATACACGAAAAGATGGGTGACACCAATAATGTGAATCTGCCACCTGGTTTTCGATTCTGTCCTACAGACGAAGAACTTGTGGTCCATTTTCTTCAACGCAAGGCCTCTCTCTTGCCTTTCCACCCCGACATCATCCCCGATCTTGATCTTTATCCTTATGATCCTTGGAACTTAGATGGTAAAGCTATGGTGGAAGGGAAGAA...
Protein
Download Protein FASTA211 aa · LXL04_038695|LXL04_038695|OH1004|PROTEIN
MTHLKLHILVKSFRTPRKIIHEKMGDTNNVNLPPGFRFCPTDEELVVHFLQRKASLLPFHPDIIPDLDLYPYDPWNLDGKAMVEGKKWYYFSRRSQNRVTANGYWESCGGDEQIVSSNGSKRIGLKKYYVFHVGEAPEGIKTNWMLQEFRVSDGSNSSRSRRRDNSKTDWVICCVYEHDYDGDDNDDGMELSCLDEVFLSLDDYDEISYPN
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_038695 |
|---|---|
| TK1151 ID | TkAUNG025080 |
| OH-1004 ID | LXL04_038695 |
| Relationship / confidence | Rbh High Identity Coverage Local Synteny Minor Chr Pair / Probable |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_038695 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr09:48270211-48271212 (-) | |||||||||
| Description | Similar to NAC104: NAC domain-containing protein 104 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006351 DNA-templated transcription Biological Process GO:0006355 regulation of DNA-templated transcription Biological Process GO:0006952 defense response Biological Process GO:0009791 post-embryonic development Biological Process GO:0009793 embryo development ending in seed dormancy Biological Process GO:0009831 plant-type cell wall modification involved in multidimensional cell growth Biological Process GO:0010089 xylem development Biological Process GO:0010628 positive regulation of gene expression Biological Process GO:0043067 regulation of programmed cell death Biological Process GO:0048367 shoot system development Biological Process GO:0048608 reproductive structure development Biological Process GO:0048731 system development Biological Process | |||||||||
| KEGG gene cross-reference | ath:AT1G61110 ath:AT5G64530 sly:101248026 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF02365.21NAM33-151 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_038695 | PF02365.21 | NAM | 33 | 151 | 7.3e-34 | 117.6 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.