Gene Card
Gene overview
cDNA / CDS / Protein Sequences
546 bp · LXL04_038007|LXL04_038007|OH1004|cDNA
ATGGATGATGACAGTAACAACAGTTTTGAATCCAAGAAAATAGTTTTTGTGACAGTTGGCACAACATCTTTTGATTCTCTTGTTAAAAGTGTGGACACTGAGCAAGTTAAACAAGAGTTATTTAAGAAAGGATACACTCACCTTGTTATTCAAATGGGTCGCGGATCCTACATTCCTAaaaagTCTAGTGGTGAAGAAGATGGATCATCATTGGTTGTAGATTACTTCACTTTTTCCTCAAGCATTGCAGACTATTTGAA...
546 bp · LXL04_038007|LXL04_038007|OH1004|CDS
ATGGATGATGACAGTAACAACAGTTTTGAATCCAAGAAAATAGTTTTTGTGACAGTTGGCACAACATCTTTTGATTCTCTTGTTAAAAGTGTGGACACTGAGCAAGTTAAACAAGAGTTATTTAAGAAAGGATACACTCACCTTGTTATTCAAATGGGTCGCGGATCCTACATTCCTAAAAAGTCTAGTGGTGAAGAAGATGGATCATCATTGGTTGTAGATTACTTCACTTTTTCCTCAAGCATTGCAGACTATTTGAA...
Protein
Download Protein FASTA181 aa · LXL04_038007|LXL04_038007|OH1004|PROTEIN
MDDDSNNSFESKKIVFVTVGTTSFDSLVKSVDTEQVKQELFKKGYTHLVIQMGRGSYIPKKSSGEEDGSSLVVDYFTFSSSIADYLKSSSLVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELAERKHLFCGSPQSLYKVIQSMELESIIPYHPGDATPVAKLINRYLGFPSD
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_038007 |
|---|---|
| TK1151 ID | TkA04G374010 |
| OH-1004 ID | LXL04_038007 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_038007 |
|---|---|
| Location | Chr09:28016868-28017885 (+) |
| Description | Similar to Alg13: UDP-N-acetylglucosamine transferase subunit ALG13 homolog |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006487 protein N-linked glycosylation Biological Process GO:0006488 dolichol-linked oligosaccharide biosynthetic process Biological Process GO:0006508 proteolysis Biological Process GO:1904262 negative regulation of TORC1 signaling Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005783 endoplasmic reticulum Cellular Component GO:0005789 endoplasmic reticulum membrane Cellular Component GO:0005829 cytosol Cellular Component GO:0043541 UDP-N-acetylglucosamine transferase complex Cellular Component GO:0098548 cytoplasmic side of Golgi membrane Cellular Component GO:0098554 cytoplasmic side of endoplasmic reticulum membrane Cellular Component |
| KEGG gene cross-reference | hsa:79868 mmu:67574 rno:300284 sce:YGL047W spo:2543352 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF04101.23Glyco_tran_28_C14-164 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_038007 | PF04101.23 | Glyco_tran_28_C | 14 | 164 | 7.1e-32 | 111.5 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.