LXL04_037884 | RubberDandelionOmics

Gene overview

LXL04_037884

Reference: OH-1004 Chr: Chr09 Coordinates: 24380374-24382181 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

687 bp · LXL04_037884|LXL04_037884|OH1004|cDNA

ATGTTTGGATCGGACGCACTGATTCTCAAGCCAGAAATTTATGTGTTTTCGTTTGAAATCTATTTCAGACACGAGAAATGTGATAATGAATCTTTACTTGATACAATTCGAATCTTGAAGCTGAAATCTTCAAAGCATGAACAAGAAGGGAGAGTCCATTCTGCTAGAAGCATTGATGGAGTTATATATTCCATATGGTCTTTACTGCCTTCATTTTGCAACTACCCTCTTGATACTGCTGAAAGTTACGAGGATTTGGA...

CDS

Download CDS FASTA

687 bp · LXL04_037884|LXL04_037884|OH1004|CDS

ATGTTTGGATCGGACGCACTGATTCTCAAGCCAGAAATTTATGTGTTTTCGTTTGAAATCTATTTCAGACACGAGAAATGTGATAATGAATCTTTACTTGATACAATTCGAATCTTGAAGCTGAAATCTTCAAAGCATGAACAAGAAGGGAGAGTCCATTCTGCTAGAAGCATTGATGGAGTTATATATTCCATATGGTCTTTACTGCCTTCATTTTGCAACTACCCTCTTGATACTGCTGAAAGTTACGAGGATTTGGA...

Protein

Download Protein FASTA

228 aa · LXL04_037884|LXL04_037884|OH1004|PROTEIN

MFGSDALILKPEIYVFSFEIYFRHEKCDNESLLDTIRILKLKSSKHEQEGRVHSARSIDGVIYSIWSLLPSFCNYPLDTAESYEDLEKVLWHTFCQEPDLRGVICSSLQILIRQNKTIVDGESQSQSQSEKVSVCEQRAVSRYALEVTTRNLDVLRLSAHDILSTLGGIFRKSDKDDGGSIQKTIGEFASIADKGIQKEADRRAKPEEIANRRRKREQDPEEIKRLRN

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_037884`
TK1151 ID	TkA04G358230
OH-1004 ID	LXL04_037884
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	98.600
Protein coverage (%)	TK1151 99.107 / OH-1004 96.491 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_037884`
Location	Chr09:24380374-24382181 (-)
Description	Similar to Rrp12: RRP12-like protein
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_037884` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Biological Process GO:0042254 ribosome biogenesis Biological Process GO:0005634 nucleus Cellular Component GO:0005730 nucleolus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0005840 ribosome Cellular Component GO:0005886 plasma membrane Cellular Component GO:0030686 90S preribosome Cellular Component GO:0030688 preribosome, small subunit precursor Cellular Component GO:0031965 nuclear membrane Cellular Component GO:0003723 RNA binding Molecular Function
KEGG gene cross-reference	dre:563195 gga:423845 hsa:23223 mmu:107094 sce:YPL012W These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.869

Rank 1 · LXL04_037884 · OH-1004

Cytoplasm0.199

Rank 2 · LXL04_037884 · OH-1004

Cell membrane0.027

Rank 3 · LXL04_037884 · OH-1004

Mitochondrion0.024

Rank 4 · LXL04_037884 · OH-1004

Endoplasmic reticulum0.016

Rank 5 · LXL04_037884 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08161.19RRP12_HEAT30-171 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_037884	`PF08161.19`	RRP12_HEAT	30	171	3e-24	86.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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