LXL04_037631 | RubberDandelionOmics

Gene overview

LXL04_037631

Reference: OH-1004 Chr: Chr09 Coordinates: 16717177-16722147 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2175 bp · LXL04_037631|LXL04_037631|OH1004|cDNA

ATGGCGGGGAGGTCAGGATCATCGACGATGATCGTCACAAACACACCGGCTAAAGATCTCGCATATACGAACTGCGCGTATTGCTCTCCTTCCGATCTTCGTCAATTTATTGATCCTGGATCCAATCTCGCTCTCGCTCTCGTTGGTGACGTTGGACAACTTGGGCTTAATGCCATCCAAAGACGTCATGCAAGAGTTTCTACAGGAGATTCAGTATCTGTTACCAGGTTTGTCCCCCCTGAAGATTTCAACATTGCATT...

CDS

Download CDS FASTA

2175 bp · LXL04_037631|LXL04_037631|OH1004|CDS

ATGGCGGGGAGGTCAGGATCATCGACGATGATCGTCACAAACACACCGGCTAAAGATCTCGCATATACGAACTGCGCGTATTGCTCTCCTTCCGATCTTCGTCAATTTATTGATCCTGGATCCAATCTCGCTCTCGCTCTCGTTGGTGACGTTGGACAACTTGGGCTTAATGCCATCCAAAGACGTCATGCAAGAGTTTCTACAGGAGATTCAGTATCTGTTACCAGGTTTGTCCCCCCTGAAGATTTCAACATTGCATT...

Protein

Download Protein FASTA

724 aa · LXL04_037631|LXL04_037631|OH1004|PROTEIN

MAGRSGSSTMIVTNTPAKDLAYTNCAYCSPSDLRQFIDPGSNLALALVGDVGQLGLNAIQRRHARVSTGDSVSVTRFVPPEDFNIALLTLELEFVKKGNKEEQVDAVHLAQHLRKKFINQVMTAGQRVTFEHQGNGYIFTVSQVAVEGQEKAAIERGLLSSDSYIVFEASNSSGIKIVNQREAASSNIFRHKEFNLQSLGIGGLGNEFADIFRRAFASRVFPPHVASKLGVKHVKGMLLYGPPGTGKTLMARQIGKMLNG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_037631`
TK1151 ID	TkAUNG027620
OH-1004 ID	LXL04_037631
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	92.600
Protein coverage (%)	TK1151 100.000 / OH-1004 24.448 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_037631

Location Chr09:16717177-16722147 (-)

Description Similar to NSF: Vesicle-fusing ATPase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g04910`	Required for vesicle-mediated transport.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0519400`	Required for vesicle-mediated transport.	The OsSec18 complex interacts with P0(P1-P2)2 to regulate vacuolar morphology in rice endosperm cell.2015 · DOI: 10.1186/s12870-014-0324-1

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_037631 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0001921 positive regulation of receptor recycling Biological Process

GO:0006886 intracellular protein transport Biological Process

GO:0006887 exocytosis Biological Process

GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport Biological Process

GO:0006891 intra-Golgi vesicle-mediated transport Biological Process

GO:0006897 endocytosis Biological Process

GO:0006909 phagocytosis Biological Process

GO:0006935 chemotaxis Biological Process

GO:0007030 Golgi organization Biological Process

GO:0009306 protein secretion Biological Process

GO:0016192 vesicle-mediated transport Biological Process

GO:0017157 regulation of exocytosis Biological Process

KEGG gene cross-reference

ath:AT4G04910

ddi:DDB_G0276153

dosa:Os05g0519400

hsa:4905

spo:2542410

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.519

Rank 1 · LXL04_037631 · OH-1004

Nucleus0.336

Rank 2 · LXL04_037631 · OH-1004

Mitochondrion0.110

Rank 3 · LXL04_037631 · OH-1004

Peroxisome0.081

Rank 4 · LXL04_037631 · OH-1004

Cell membrane0.065

Rank 5 · LXL04_037631 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02933.24CDC48_2105-148 aa

PF00004.36AAA237-377 aa

PF07728.21AAA_5237-312 aa

PF17862.8AAA_lid_3404-440 aa

PF00004.36AAA517-629 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_037631	`PF02933.24`	CDC48_2	105	148	5.9e-07	29.8
LXL04_037631	`PF00004.36`	AAA	237	377	1.9e-48	165.0
LXL04_037631	`PF07728.21`	AAA_5	237	312	5.6e-08	33.6
LXL04_037631	`PF17862.8`	AAA_lid_3	404	440	2.7e-11	43.5
LXL04_037631	`PF00004.36`	AAA	517	629	1.9e-48	165.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9M0Y8`	Arabidopsis thaliana	Vesicle-fusing ATPase	79.324%	Swiss-Prot	strong database homology
`Q0DGP6`	Oryza sativa subsp. japonica	Vesicle-fusing ATPase	75.376%	Swiss-Prot	strong database homology

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