LXL04_037009 | RubberDandelionOmics

Gene overview

LXL04_037009

Reference: OH-1004 Chr: Chr08 Coordinates: 51611857-51613160 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

681 bp · LXL04_037009|LXL04_037009|OH1004|cDNA

ATGAAGAGCATGAACACTTTGCTGCCAACTTCCGTCTACAAAGCGCCACTGTCGACTTTCTTCTCGATTAATCCTTCAGTTCTTAGATTGACTCCTCGGTTTCGCGGCAAAACCTTCAACGTTCATGCATCTTCAAATGAATCAGATACGAAAACAGTGGAGGAGGGAAAAGAAGAGAACCAGGAATCGATTGGAGCTACGAATGCTGAAACAAAGAAAATTTCAGTTGGAGCAACATCGAGCAGTTCAGCGATCGAGAA...

CDS

Download CDS FASTA

681 bp · LXL04_037009|LXL04_037009|OH1004|CDS

ATGAAGAGCATGAACACTTTGCTGCCAACTTCCGTCTACAAAGCGCCACTGTCGACTTTCTTCTCGATTAATCCTTCAGTTCTTAGATTGACTCCTCGGTTTCGCGGCAAAACCTTCAACGTTCATGCATCTTCAAATGAATCAGATACGAAAACAGTGGAGGAGGGAAAAGAAGAGAACCAGGAATCGATTGGAGCTACGAATGCTGAAACAAAGAAAATTTCAGTTGGAGCAACATCGAGCAGTTCAGCGATCGAGAA...

Protein

Download Protein FASTA

226 aa · LXL04_037009|LXL04_037009|OH1004|PROTEIN

MKSMNTLLPTSVYKAPLSTFFSINPSVLRLTPRFRGKTFNVHASSNESDTKTVEEGKEENQESIGATNAETKKISVGATSSSSAIEKDLKKVVQKTAATFAPRASTASKNPAVPGTTLYTVFEVQAYASMVLGGALSFNLLFPSNEPDIWRLMGMWSIWMFTIPSLRARDCSKNEKEALNYLFLIVPLLNVTIPFFLKSFALVWSADTVAFFAMYAWKLGWLQKTE

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_037009`
TK1151 ID	TkA04G011050
OH-1004 ID	LXL04_037009
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_037009

Location Chr08:51611857-51613160 (-)

Description Similar to RPH1: Protein RESISTANCE TO PHYTOPHTHORA 1, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g48070`	Plays a positive role in the immune response to the oomycetes P.brassicae, including induced oxidative burst (e.g. H(2)O(2)) and enhanced expression of defense-related genes.	The chloroplast protein RPH1 plays a role in the immune response of Arabidopsis to Phytophthora brassicae.2009 · DOI: 10.1111/j.1365-313x.2008.03779.x

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_037009 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0002229 defense response to oomycetes Biological Process

GO:0006952 defense response Biological Process

GO:0010729 positive regulation of hydrogen peroxide biosynthetic process Biological Process

GO:0050665 hydrogen peroxide biosynthetic process Biological Process

GO:1902290 positive regulation of defense response to oomycetes Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT2G48070

sot:102592434

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.987

Rank 1 · LXL04_037009 · OH-1004

Mitochondrion0.018

Rank 2 · LXL04_037009 · OH-1004

Nucleus0.015

Rank 3 · LXL04_037009 · OH-1004

Cytoplasm0.014

Rank 4 · LXL04_037009 · OH-1004

Cell membrane0.012

Rank 5 · LXL04_037009 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9ZU82`	Arabidopsis thaliana	Protein RESISTANCE TO PHYTOPHTHORA 1, chloroplastic	88.112%	Swiss-Prot	moderate database homology

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