LXL04_036996 | RubberDandelionOmics

Gene overview

LXL04_036996

Reference: OH-1004 Chr: Chr08 Coordinates: 51488628-51497646 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3933 bp · LXL04_036996|LXL04_036996|OH1004|cDNA

ATGGCGCCGAATCGGAGAAAAGGTGCCAGTAAAGCCGCTGCAGCCGCCGCCGCTTGTCGGCAGTGGAAGGTCGGCGATCTTGTTCTTGCCAAGGTGAAAGGATTCCCTGCTTGGCCTGCTACGGTTAGTGAACCTGAGAAGTGGGGGTACTCTACTGATTGGAAGAAAGTTCTAGTCTTCTTCTTTGGAACCCAACAAATAGCATTCTGCAATCCAGGTGATGTTGAGGCATTTACAGAAGAAAAAAAAGACTCCCTTTT...

CDS

Download CDS FASTA

3933 bp · LXL04_036996|LXL04_036996|OH1004|CDS

ATGGCGCCGAATCGGAGAAAAGGTGCCAGTAAAGCCGCTGCAGCCGCCGCCGCTTGTCGGCAGTGGAAGGTCGGCGATCTTGTTCTTGCCAAGGTGAAAGGATTCCCTGCTTGGCCTGCTACGGTTAGTGAACCTGAGAAGTGGGGGTACTCTACTGATTGGAAGAAAGTTCTAGTCTTCTTCTTTGGAACCCAACAAATAGCATTCTGCAATCCAGGTGATGTTGAGGCATTTACAGAAGAAAAAAAAGACTCCCTTTT...

Protein

Download Protein FASTA

1310 aa · LXL04_036996|LXL04_036996|OH1004|PROTEIN

MAPNRRKGASKAAAAAAACRQWKVGDLVLAKVKGFPAWPATVSEPEKWGYSTDWKKVLVFFFGTQQIAFCNPGDVEAFTEEKKDSLLSKRHGKGADFVRAVREIIDSYEELKKQVQVDTTDNTTANQTPSTNPKSEEDEQQHVVLNEKPLTVTPSIDPCPQISDSSKPNGDVKVPEVSETILETTTKAPPVPTTYSRKKHSAIHARVPSARRSARTESSKSQNPTEDSAAGGMSNGNLSRRAKRARTSPHSSDKDIVSKS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_036996`
TK1151 ID	TkA04G011380
OH-1004 ID	LXL04_036996
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_036996

Location Chr08:51488628-51497646 (+)

Description Similar to HULK3: Protein HUA2-LIKE 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g63070`	Probable transcription factor that acts with partial redundancy with HULK1 and HULK2.	A plant-specific HUA2-LIKE (HULK) gene family in Arabidopsis thaliana is essential for development.2014 · DOI: 10.1111/tpj.12629
`At2g48160`	Probable transcription factor that acts with partial redundancy with HULK1 and HULK3.	A plant-specific HUA2-LIKE (HULK) gene family in Arabidopsis thaliana is essential for development.2014 · DOI: 10.1111/tpj.12629
`At5g23150`	Transcription factor that functions as a repressor of flowering by enhancing the expression of several genes that delay flowering including FLC, FLM/MAF1, MAF2 and SVP.	HUA1 and HUA2 are two members of the floral homeotic AGAMOUS pathway.1999 · DOI: 10.1016/s1097-2765(00)80462-1 Two RNA binding proteins, HEN4 and HUA1, act in the processing of AGAMOUS pre-mRNA in Arabidopsis thaliana.2003 · DOI: 10.1016/s1534-5807(02)00399-4 HUA2 is required for the expression of floral repressors in Arabidopsis thaliana.2005 · DOI: 10.1111/j.1365-313x.2004.02300.x Natural variation for anthocyanin accumulation under high-light and low-temperature stress is attributable to the ENHANCER OF AG-4 2 (HUA2) locus in combination with PRODUCTION OF ANTHOCYANIN PIGMENT1 (PAP1) and PAP2.2015 · DOI: 10.1111/nph.13177
`At5g08230`	Probable transcription factor that acts with partial redundancy with HULK2 and HULK3.	A plant-specific HUA2-LIKE (HULK) gene family in Arabidopsis thaliana is essential for development.2014 · DOI: 10.1111/tpj.12629

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036996 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006338 chromatin remodeling Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0006397 mRNA processing Biological Process

GO:0009908 flower development Biological Process

GO:0009910 negative regulation of flower development Biological Process

GO:0030154 cell differentiation Biological Process

GO:0043481 anthocyanin accumulation in tissues in response to UV light Biological Process

GO:0048497 maintenance of floral organ identity Biological Process

GO:0048510 regulation of timing of transition from vegetative to reproductive phase Biological Process

GO:0005634 nucleus Cellular Component

GO:0003700 DNA-binding transcription factor activity Molecular Function

KEGG gene cross-reference

ath:AT2G48160

ath:AT3G63070

ath:AT5G23150

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.954

Rank 1 · LXL04_036996 · OH-1004

Cytoplasm0.112

Rank 2 · LXL04_036996 · OH-1004

Cell membrane0.035

Rank 3 · LXL04_036996 · OH-1004

Endoplasmic reticulum0.018

Rank 4 · LXL04_036996 · OH-1004

Mitochondrion0.010

Rank 5 · LXL04_036996 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00855.24PWWP25-108 aa

PF12243.15CTK3796-914 aa

PF04818.20CID797-919 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_036996	`PF00855.24`	PWWP	25	108	9.7e-19	68.4
LXL04_036996	`PF12243.15`	CTK3	796	914	2.3e-06	28.4
LXL04_036996	`PF04818.20`	CID	797	919	1.7e-10	41.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4IZM8`	Arabidopsis thaliana	Protein HUA2-LIKE 3	52.096%	Swiss-Prot	weak database homology
`F4IN78`	Arabidopsis thaliana	Protein HUA2-LIKE 2	36.923%	Swiss-Prot	weak database homology
`Q9XER9`	Arabidopsis thaliana	ENHANCER OF AG-4 protein 2	45.307%	Swiss-Prot	weak database homology
`Q9LEY4`	Arabidopsis thaliana	Protein HUA2-LIKE 1	42.157%	Swiss-Prot	weak database homology

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