LXL04_036899 | RubberDandelionOmics

Gene overview

LXL04_036899

Reference: OH-1004 Chr: Chr08 Coordinates: 49907744-49909152 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

783 bp · LXL04_036899|LXL04_036899|OH1004|cDNA

ATGGCATATTTCAAAGCTAAAACCTTTCATTTTATTCTTctagctcttcttcttcttcttccatgTGTAATTTGTTCATCATCTCAAGAACATATCAAAGAAGACAGGCTTAATGATCATCACGAAGTTGTCCAGTCAATCAGCCCAAGATTGTCATTACAGATAGTTATACATGGGTTTCTCCTTTGGGCTTCCATGGGTTTCTTGATTCCCGTTGGAATCTTGGCCATTAGATTGTCAAACAGAGAGGAAAGTCAAAG...

CDS

Download CDS FASTA

783 bp · LXL04_036899|LXL04_036899|OH1004|CDS

ATGGCATATTTCAAAGCTAAAACCTTTCATTTTATTCTTCTAGCTCTTCTTCTTCTTCTTCCATGTGTAATTTGTTCATCATCTCAAGAACATATCAAAGAAGACAGGCTTAATGATCATCACGAAGTTGTCCAGTCAATCAGCCCAAGATTGTCATTACAGATAGTTATACATGGGTTTCTCCTTTGGGCTTCCATGGGTTTCTTGATTCCCGTTGGAATCTTGGCCATTAGATTGTCAAACAGAGAGGAAAGTCAAAG...

Protein

Download Protein FASTA

260 aa · LXL04_036899|LXL04_036899|OH1004|PROTEIN

MAYFKAKTFHFILLALLLLLPCVICSSSQEHIKEDRLNDHHEVVQSISPRLSLQIVIHGFLLWASMGFLIPVGILAIRLSNREESQRKLRIMFCIHAITQAIFPLAETILSVILVTAGAILSIKNFSNTFDNMHRRIGVALYGLVLLQALTGLLRPARGVKGRSLWYFSHWSLGITISLLGIIGVYTGLQAYQKRISRNIQPWVMFYTAEIVCIGFVYLFQEKWEYIQKQGVVPGNHESTTIVELANNRDILSSPNKDSC

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_036899`
TK1151 ID	TkA04G018050
OH-1004 ID	LXL04_036899
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	96.900
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_036899

Location Chr08:49907744-49909152 (+)

Description Similar to At4g18260: Cytochrome b561 domain-containing protein At4g18260

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g18260`	Cytochrome b561 domain-containing protein At4g18260.	No verified direct reference in this release
`At2g30890`	Cytochrome b561 domain-containing protein At2g30890.	No verified direct reference in this release
`At4g12980`	May act as a catecholamine-responsive trans-membrane electron transporter.	No verified direct reference in this release
`At5g47530`	May act as a catecholamine-responsive trans-membrane electron transporter.	No verified direct reference in this release
`At4g17280`	May act as a catecholamine-responsive trans-membrane electron transporter.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036899 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005576 extracellular region Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0016491 oxidoreductase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

GO:0140575 transmembrane monodehydroascorbate reductase activity Molecular Function

KEGG gene cross-reference

ath:AT2G30890

ath:AT4G12980

ath:AT4G17280

ath:AT4G18260

ath:AT5G47530

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.463

Rank 1 · LXL04_036899 · OH-1004

Lysosome / Vacuole0.226

Rank 2 · LXL04_036899 · OH-1004

Endoplasmic reticulum0.171

Rank 3 · LXL04_036899 · OH-1004

Cytoplasm0.140

Rank 4 · LXL04_036899 · OH-1004

Golgi apparatus0.087

Rank 5 · LXL04_036899 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03188.22Cytochrom_B56157-190 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_036899	`PF03188.22`	Cytochrom_B561	57	190	4.2e-06	27.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q0WPS2`	Arabidopsis thaliana	Cytochrome b561 domain-containing protein At4g18260	40.562%	Swiss-Prot	moderate database homology
`O80854`	Arabidopsis thaliana	Cytochrome b561 domain-containing protein At2g30890	41.333%	Swiss-Prot	moderate database homology
`Q9SV71`	Arabidopsis thaliana	Cytochrome b561 and DOMON domain-containing protein At4g12980	30.818%	Swiss-Prot	moderate database homology
`Q9FGK4`	Arabidopsis thaliana	Cytochrome b561 and DOMON domain-containing protein At5g47530	27.684%	Swiss-Prot	weak database homology
`Q8VYH6`	Arabidopsis thaliana	Cytochrome b561 and DOMON domain-containing protein At4g17280	27.746%	Swiss-Prot	weak database homology

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