LXL04_036189 | RubberDandelionOmics

Gene overview

LXL04_036189

Reference: OH-1004 Chr: Chr08 Coordinates: 37756436-37757553 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

933 bp · LXL04_036189|LXL04_036189|OH1004|cDNA

ATGGGGACTCAAACAATGGGATCAAACGGTGCGACACAAAAACCTATGTTCGATGGATTGTCAAGGCAAGGATCTTTGTATAACCTAACTCTAGACGAAGTTCAGCAGCAATTAGGAGATTTAGGGAAACCTTTCAGTAGTATGAATCTCGATGAGTTTCTCAAAAACGTTTGGTCAGCTGAAGCTAATCAAGGAACGAACAGTACCTCCCCTGAACTCACCCAACTTGCTTCAGCTTCATCGTTACCCAGACAACTAAG...

CDS

Download CDS FASTA

933 bp · LXL04_036189|LXL04_036189|OH1004|CDS

ATGGGGACTCAAACAATGGGATCAAACGGTGCGACACAAAAACCTATGTTCGATGGATTGTCAAGGCAAGGATCTTTGTATAACCTAACTCTAGACGAAGTTCAGCAGCAATTAGGAGATTTAGGGAAACCTTTCAGTAGTATGAATCTCGATGAGTTTCTCAAAAACGTTTGGTCAGCTGAAGCTAATCAAGGAACGAACAGTACCTCCCCTGAACTCACCCAACTTGCTTCAGCTTCATCGTTACCCAGACAACTAAG...

Protein

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310 aa · LXL04_036189|LXL04_036189|OH1004|PROTEIN

MGTQTMGSNGATQKPMFDGLSRQGSLYNLTLDEVQQQLGDLGKPFSSMNLDEFLKNVWSAEANQGTNSTSPELTQLASASSLPRQLSLNFTKDLTKKTVDQVWQDIQHSQKKNNGNESETNINSSSSCKRQPTLGEMTLEDFLVKAGIVAESSPTEKNQEQNLDQQWMHYQIPQIQQQHVVMSGHYQAPQPINVAGNPMIDSTGYLETRMTMSPPPLMGNVSDFGRKRPPSGDVVEKTVERRQKRMIKNRESAARSRARK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_036189`
TK1151 ID	TkA04G068350
OH-1004 ID	LXL04_036189
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_036189

Location Chr08:37756436-37757553 (+)

Description Similar to DPBF3: ABSCISIC ACID-INSENSITIVE 5-like protein 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g56850`	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter.	No verified direct reference in this release
`At2g41070`	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 gene promoter.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0859300`	May act as a transcription factor with transactivation activity observed in yeast.	A bZIP transcription factor, OsABI5, is involved in rice fertility and stress tolerance.2008 · DOI: 10.1007/s11103-008-9298-4 Phosphorylation-mediated regulation of a rice ABA responsive element binding factor.2011 · DOI: 10.1016/j.phytochem.2010.10.005 A rice orthologue of the ABA receptor, OsPYL/RCAR5, is a positive regulator of the ABA signal transduction pathway in seed germination and early seedling growth.2012 · DOI: 10.1093/jxb/err338
`Os08g0472000`	Transcription activator that mediates abscisic acid (ABA) signaling.	No verified direct reference in this release
`Os06g0211200`	Transcription factor involved in abscisic acid (ABA) signaling pathway.	Rice ABI5-Like1 regulates abscisic acid and auxin responses by affecting the expression of ABRE-containing genes.2011 · DOI: 10.1104/pp.111.173427 Constitutive activation of transcription factor OsbZIP46 improves drought tolerance in rice.2012 · DOI: 10.1104/pp.111.190389 Functional characterization and reconstitution of ABA signaling components using transient gene expression in rice protoplasts.2015 · DOI: 10.3389/fpls.2015.00614 MODD Mediates Deactivation and Degradation of OsbZIP46 to Negatively Regulate ABA Signaling and Drought Resistance in Rice.2016 · DOI: 10.1105/tpc.16.00171

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036189 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009409 response to cold Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009789 positive regulation of abscisic acid-activated signaling pathway Biological Process

GO:0009845 seed germination Biological Process

GO:0010115 regulation of abscisic acid biosynthetic process Biological Process

GO:0010152 pollen maturation Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

KEGG gene cross-reference

ath:AT2G41070

ath:AT3G56850

dosa:Os01g0859300

dosa:Os06g0211200

dosa:Os08g0472000

osa:4325061

osa:4340462

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.946

Rank 1 · LXL04_036189 · OH-1004

Cytoplasm0.159

Rank 2 · LXL04_036189 · OH-1004

Cell membrane0.028

Rank 3 · LXL04_036189 · OH-1004

Endoplasmic reticulum0.013

Rank 4 · LXL04_036189 · OH-1004

Mitochondrion0.010

Rank 5 · LXL04_036189 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07716.21bZIP_2238-285 aa

PF00170.27bZIP_1241-286 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_036189	`PF07716.21`	bZIP_2	238	285	1.6e-10	41.6
LXL04_036189	`PF00170.27`	bZIP_1	241	286	8.2e-14	52.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LES3`	Arabidopsis thaliana	ABSCISIC ACID-INSENSITIVE 5-like protein 2	50.311%	Swiss-Prot	strong database homology
`Q9C5Q2`	Arabidopsis thaliana	ABSCISIC ACID-INSENSITIVE 5-like protein 3	47.436%	Swiss-Prot	moderate database homology
`Q8RZ35`	Oryza sativa subsp. japonica	bZIP transcription factor ABI5 homolog	37.580%	Swiss-Prot	moderate database homology
`Q6ZDF3`	Oryza sativa subsp. japonica	bZIP transcription factor TRAB1	35.112%	Swiss-Prot	moderate database homology
`Q69TW5`	Oryza sativa subsp. japonica	bZIP transcription factor 46	37.544%	Swiss-Prot	moderate database homology

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