LXL04_035928 | RubberDandelionOmics

Gene overview

LXL04_035928

Reference: OH-1004 Chr: Chr08 Coordinates: 32347430-32350202 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1677 bp · LXL04_035928|LXL04_035928|OH1004|cDNA

ATGGGGAGCACTGGATTTTCATGGAAATTGGCCGATCATCCCAAGCTACCCAAGGGGAAGCTCGTAGCCATGATTGTTTTGGATGGTTGGGGTGAAGCGTCTCCCGATAAGTACAACTGCATCCATGTTGCTGAAACCCCAACCATGGATTCTCTCAAAAACGGCGCCCCTGATCACTGGAGATTGGTGAGGGCTCATGGTACTGCTGTCGGTCTTCCAACTGAAGATGACATGGGAAACAGTGAAGTTGGGCATAATGC...

CDS

Download CDS FASTA

1677 bp · LXL04_035928|LXL04_035928|OH1004|CDS

ATGGGGAGCACTGGATTTTCATGGAAATTGGCCGATCATCCCAAGCTACCCAAGGGGAAGCTCGTAGCCATGATTGTTTTGGATGGTTGGGGTGAAGCGTCTCCCGATAAGTACAACTGCATCCATGTTGCTGAAACCCCAACCATGGATTCTCTCAAAAACGGCGCCCCTGATCACTGGAGATTGGTGAGGGCTCATGGTACTGCTGTCGGTCTTCCAACTGAAGATGACATGGGAAACAGTGAAGTTGGGCATAATGC...

Protein

Download Protein FASTA

558 aa · LXL04_035928|LXL04_035928|OH1004|PROTEIN

MGSTGFSWKLADHPKLPKGKLVAMIVLDGWGEASPDKYNCIHVAETPTMDSLKNGAPDHWRLVRAHGTAVGLPTEDDMGNSEVGHNALGAGRIYAQGAKLVDAALESGKIYEDEGFNYIKESFPNNTLHLIGLMSDGGVHSRLDQVQLLLKGASERGAKKIRLHVLTDGRDVLDGSSVGFAETLEKELSDLRKKGIDAQVASGGGRMYVTMDRYENDWEVVKRGWDAQVLGEAPHKFKNVVEAIKTLRQAPGSNDQYLPP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_035928`
TK1151 ID	TkA04G095660
OH-1004 ID	LXL04_035928
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	99.200
Protein coverage (%)	TK1151 100.000 / OH-1004 22.939 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_035928

Location Chr08:32347430-32350202 (+)

Description Similar to PGM1: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g08590`	Catalyzes the interconversion of 2-phosphoglycerate (2-PGA) and 3-phosphoglycerate (3-PGA).	The glycolytic enzyme, phosphoglycerate mutase, has critical roles in stomatal movement, vegetative growth, and pollen production in Arabidopsis thaliana.2011 · DOI: 10.1093/jxb/err223
`At1g09780`	Catalyzes the interconversion of 2-phosphoglycerate (2-PGA) and 3-phosphoglycerate (3-PGA).	The glycolytic enzyme, phosphoglycerate mutase, has critical roles in stomatal movement, vegetative growth, and pollen production in Arabidopsis thaliana.2011 · DOI: 10.1093/jxb/err223

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035928 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005975 carbohydrate metabolic process Biological Process

GO:0006007 glucose catabolic process Biological Process

GO:0006096 glycolytic process Biological Process

GO:0009409 response to cold Biological Process

GO:0009555 pollen development Biological Process

GO:0009637 response to blue light Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0010037 response to carbon dioxide Biological Process

GO:0010118 stomatal movement Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005740 mitochondrial envelope Cellular Component

KEGG gene cross-reference

ath:AT1G09780

ath:AT3G08590

zma:542578

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.685

Rank 1 · LXL04_035928 · OH-1004

Nucleus0.281

Rank 2 · LXL04_035928 · OH-1004

Mitochondrion0.137

Rank 3 · LXL04_035928 · OH-1004

Cell membrane0.125

Rank 4 · LXL04_035928 · OH-1004

Endoplasmic reticulum0.083

Rank 5 · LXL04_035928 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01676.24Metalloenzyme22-543 aa

PF06415.19iPGM_N101-322 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_035928	`PF01676.24`	Metalloenzyme	22	543	6.5e-89	298.5
LXL04_035928	`PF06415.19`	iPGM_N	101	322	4.2e-58	197.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9M9K1`	Arabidopsis thaliana	Probable 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 2	83.900%	Swiss-Prot	strong database homology
`O04499`	Arabidopsis thaliana	2,3-bisphosphoglycerate-independent phosphoglycerate mutase 1	82.734%	Swiss-Prot	strong database homology

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