LXL04_035902 | RubberDandelionOmics

Gene overview

LXL04_035902

Reference: OH-1004 Chr: Chr08 Coordinates: 31692269-31693644 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

915 bp · LXL04_035902|LXL04_035902|OH1004|cDNA

ATGGCTTCCTCTAagttgatgatgaagatgtcTTCTCCCACTTCGAGAAATTCGGATCTCATCAGAAGAAAGTCCTCTAATTCCTCTTCGtcttccacctccaccaacCACCATCTTAATCACAATCACAAACACCTTGGATACAGAACCGACAACAATCCTGGCGTCCTTCAGATGACCGTTGACGGTCTTTTGCCAAGCGTGCACAATAACAACGAACGAAAACCTCCCGAAACGACTCTATTGGATGCAGAAATTTC...

CDS

Download CDS FASTA

915 bp · LXL04_035902|LXL04_035902|OH1004|CDS

ATGGCTTCCTCTAAGTTGATGATGAAGATGTCTTCTCCCACTTCGAGAAATTCGGATCTCATCAGAAGAAAGTCCTCTAATTCCTCTTCGTCTTCCACCTCCACCAACCACCATCTTAATCACAATCACAAACACCTTGGATACAGAACCGACAACAATCCTGGCGTCCTTCAGATGACCGTTGACGGTCTTTTGCCAAGCGTGCACAATAACAACGAACGAAAACCTCCCGAAACGACTCTATTGGATGCAGAAATTTC...

Protein

Download Protein FASTA

304 aa · LXL04_035902|LXL04_035902|OH1004|PROTEIN

MASSKLMMKMSSPTSRNSDLIRRKSSNSSSSSTSTNHHLNHNHKHLGYRTDNNPGVLQMTVDGLLPSVHNNNERKPPETTLLDAEISLLDAAGALTSIRDSETTGNVSREEIVRTSSNGSQKTVDDVWKEIVAGRSCKQEVPDEMMTLEDFLAKAGAVEEEDVKIAPSHLQTERLSGGIFSFENPIHPQNVDGVVGFGTGVDETGGRGKRRALLEPLDKAAQQRQRRMIKNRESAARSRERKQAYQAELESLAVKLEEEN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_035902`
TK1151 ID	TkA04G098040
OH-1004 ID	LXL04_035902
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	84.400
Protein coverage (%)	TK1151 100.000 / OH-1004 52.632 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_035902

Location Chr08:31692269-31693644 (+)

Description Similar to GBF4: G-box-binding factor 4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g03970`	Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter.	Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein.1994 · DOI: 10.1073/pnas.91.7.2522
`At2g36270`	Participates in ABA-regulated gene expression during seed development and subsequent vegetative stage by acting as the major mediator of ABA repression of growth.	A postgermination developmental arrest checkpoint is mediated by abscisic acid and requires the ABI5 transcription factor in Arabidopsis.2001 · DOI: 10.1073/pnas.081594298 Regulation of Arabidopsis thaliana Em genes: role of ABI5.2002 · DOI: 10.1046/j.1365-313x.2002.01295.x The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis.2002 · DOI: 10.1105/tpc.000869 Regulation and role of the Arabidopsis abscisic acid-insensitive 5 gene in abscisic acid, sugar, and stress response.2002 · DOI: 10.1104/pp.005793 ABI5 acts downstream of ABI3 to execute an ABA-dependent growth arrest during germination.2002 · DOI: 10.1046/j.1365-313x.2002.01430.x Mitogen-activated protein kinase signaling in postgermination arrest of development by abscisic acid.2002 · DOI: 10.1073/pnas.242607499 Interactions of abscisic acid and sugar signalling in the regulation of leaf senescence.2004 · DOI: 10.1007/s00425-004-1279-5 Transcriptional regulation of ABI3- and ABA-responsive genes including RD29B and RD29A in seeds, germinating embryos, and seedlings of Arabidopsis.2006 · DOI: 10.1007/s11103-005-2418-5 Monomerization of abscisic acid receptors through CARKs-mediated phosphorylation.2022 · DOI: 10.1111/nph.18149
`At2g41070`	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 gene promoter.	No verified direct reference in this release
`At3g56850`	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0867300`	Transcription activator that binds to the ABA-responsive elements (ABREs) in vitro.	The bZIP transcription factor OsABF1 is an ABA responsive element binding factor that enhances abiotic stress signaling in rice.2010 · DOI: 10.1007/s11103-009-9592-9 Phosphorylation of D-allose by hexokinase involved in regulation of OsABF1 expression for growth inhibition in Oryza sativa L.2013 · DOI: 10.1007/s00425-013-1853-9

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035902 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009739 response to gibberellin Biological Process

GO:0009789 positive regulation of abscisic acid-activated signaling pathway Biological Process

GO:0009845 seed germination Biological Process

GO:0010115 regulation of abscisic acid biosynthetic process Biological Process

GO:0010182 sugar mediated signaling pathway Biological Process

GO:0010187 negative regulation of seed germination Biological Process

KEGG gene cross-reference

ath:AT1G03970

ath:AT2G36270

ath:AT2G41070

ath:AT3G56850

dosa:Os01g0867300

osa:4325078

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.973

Rank 1 · LXL04_035902 · OH-1004

Cytoplasm0.093

Rank 2 · LXL04_035902 · OH-1004

Cell membrane0.026

Rank 3 · LXL04_035902 · OH-1004

Endoplasmic reticulum0.014

Rank 4 · LXL04_035902 · OH-1004

Plastid0.010

Rank 5 · LXL04_035902 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00170.27bZIP_1221-276 aa

PF07716.21bZIP_2221-272 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_035902	`PF00170.27`	bZIP_1	221	276	3.4e-11	43.8
LXL04_035902	`PF07716.21`	bZIP_2	221	272	9.2e-09	35.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`P42777`	Arabidopsis thaliana	G-box-binding factor 4	54.315%	Swiss-Prot	moderate database homology
`Q9SJN0`	Arabidopsis thaliana	Protein ABSCISIC ACID-INSENSITIVE 5	43.103%	Swiss-Prot	weak database homology
`Q9C5Q2`	Arabidopsis thaliana	ABSCISIC ACID-INSENSITIVE 5-like protein 3	36.181%	Swiss-Prot	moderate database homology
`Q9LES3`	Arabidopsis thaliana	ABSCISIC ACID-INSENSITIVE 5-like protein 2	30.909%	Swiss-Prot	moderate database homology
`Q0JHF1`	Oryza sativa subsp. japonica	bZIP transcription factor 12	49.375%	Swiss-Prot	moderate database homology

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