LXL04_035337 | RubberDandelionOmics

Gene overview

LXL04_035337

Reference: OH-1004 Chr: Chr08 Coordinates: 20554106-20558128 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2451 bp · LXL04_035337|LXL04_035337|OH1004|cDNA

ATGATGATAGATCTGGGATCGTTCTCCGACGAGAAATTCGACGCCAAGAAATGGATAAACAATGCTTGCCAATCGCGGCACCCTCAGGATCCCTTAGACAAGCACCTAGTGGATCTCGAGATGAAGCTACAGATGGTGTCCGAGGAGATAGCCGCCTCACTCGAAGAACAGAGCTCCGCCGCCATCCTCCGTGTCCCTCGCGCTACTCGTGACGTGATCCGCCTCCGTGACGATGCCCTCTCCCTCCGACAATCCGTCGC...

CDS

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2451 bp · LXL04_035337|LXL04_035337|OH1004|CDS

ATGATGATAGATCTGGGATCGTTCTCCGACGAGAAATTCGACGCCAAGAAATGGATAAACAATGCTTGCCAATCGCGGCACCCTCAGGATCCCTTAGACAAGCACCTAGTGGATCTCGAGATGAAGCTACAGATGGTGTCCGAGGAGATAGCCGCCTCACTCGAAGAACAGAGCTCCGCCGCCATCCTCCGTGTCCCTCGCGCTACTCGTGACGTGATCCGCCTCCGTGACGATGCCCTCTCCCTCCGACAATCCGTCGC...

Protein

Download Protein FASTA

816 aa · LXL04_035337|LXL04_035337|OH1004|PROTEIN

MMIDLGSFSDEKFDAKKWINNACQSRHPQDPLDKHLVDLEMKLQMVSEEIAASLEEQSSAAILRVPRATRDVIRLRDDALSLRQSVASILLKLKKAEGSSAESIATLAKVDTVKQRMEAAYKTLQDAAGLTQLSSTVEDVFASNDLPRAAETLANMRHCLTAVGEVAEFANIRKQLEVLEDRLDSMVQPRLTDAITNRKVNVAQDLREILIRIGRYKSLESHYTKVHLKPIRQLWEDYELKQQRSKTGSERSQVETISSA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_035337`
TK1151 ID	TkA04G141780
OH-1004 ID	LXL04_035337
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.300
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_035337

Location Chr08:20554106-20558128 (+)

Description Similar to COG7: Conserved oligomeric Golgi complex subunit 7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g51430`	Required for normal Golgi function.	EMBRYO YELLOW gene, encoding a subunit of the conserved oligomeric Golgi complex, is required for appropriate cell expansion and meristem organization in Arabidopsis thaliana.2008 · DOI: 10.1111/j.1365-2443.2008.01186.x

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035337 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000301 retrograde transport, vesicle recycling within Golgi Biological Process

GO:0006886 intracellular protein transport Biological Process

GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum Biological Process

GO:0007030 Golgi organization Biological Process

GO:0009101 glycoprotein biosynthetic process Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0009826 unidimensional cell growth Biological Process

GO:0009933 meristem structural organization Biological Process

GO:0010016 shoot system morphogenesis Biological Process

GO:0033365 protein localization to organelle Biological Process

GO:0034067 protein localization to Golgi apparatus Biological Process

GO:0045053 protein retention in Golgi apparatus Biological Process

KEGG gene cross-reference

ath:AT5G51430

bta:504790

hsa:91949

mmu:233824

rno:293456

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.510

Rank 1 · LXL04_035337 · OH-1004

Golgi apparatus0.500

Rank 2 · LXL04_035337 · OH-1004

Nucleus0.135

Rank 3 · LXL04_035337 · OH-1004

Lysosome / Vacuole0.128

Rank 4 · LXL04_035337 · OH-1004

Cell membrane0.112

Rank 5 · LXL04_035337 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10191.16COG74-812 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_035337	`PF10191.16`	COG7	4	812	1.7e-260	867.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FGN0`	Arabidopsis thaliana	Conserved oligomeric Golgi complex subunit 7	73.565%	Swiss-Prot	strong database homology

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