Gene Card
Gene overview
cDNA / CDS / Protein Sequences
3159 bp · LXL04_035316|LXL04_035316|OH1004|cDNA
ATGAGTGACAACAAAGGAGGAGACAAGTCCAAGAAACAGAAACATTCGACGCCTTCTCCTAAGGAGAATCTAGTTCAAGAATCCCTAGAAGATCCGTCGGTTGCAGTCGTTGGCCCTACGTTTCTCTCTCCACCACTCCCACTaccacagccaccaccgccgccaccacctTCTTCCCAGCTTTACATCACGACGACCGAAACCGTCAATCCCAAAAGACCTAGATACACTAGCGCTACCGGCCAATGGAAGCTCTTACC...
3159 bp · LXL04_035316|LXL04_035316|OH1004|CDS
ATGAGTGACAACAAAGGAGGAGACAAGTCCAAGAAACAGAAACATTCGACGCCTTCTCCTAAGGAGAATCTAGTTCAAGAATCCCTAGAAGATCCGTCGGTTGCAGTCGTTGGCCCTACGTTTCTCTCTCCACCACTCCCACTACCACAGCCACCACCGCCGCCACCACCTTCTTCCCAGCTTTACATCACGACGACCGAAACCGTCAATCCCAAAAGACCTAGATACACTAGCGCTACCGGCCAATGGAAGCTCTTACC...
Protein
Download Protein FASTA1052 aa · LXL04_035316|LXL04_035316|OH1004|PROTEIN
MSDNKGGDKSKKQKHSTPSPKENLVQESLEDPSVAVVGPTFLSPPLPLPQPPPPPPPSSQLYITTTETVNPKRPRYTSATGQWKLLPSASQKPLPINVVGTDKSPSPSTNHPPPTHAAVAAASSSDTTSSPSHSPRPSVSGQETSKSENEQQYTQHQLRKGKYVSPVWKPNEMLWLARAWRVQYQGGGGTPGSDHASEINLNPITMECNVITPTPTPPSQLQGRGKTRAEKDREVAEFLQRNGVNRDAKTAGTKWDNMLG...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_035316 |
|---|---|
| TK1151 ID | TkA04G143290 |
| OH-1004 ID | LXL04_035316 |
| Relationship / confidence | Rbh Sequence Supported / Probable |
| Protein identity (%) | 93.700 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 79.943Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_035316 |
|---|---|
| Location | Chr08:20202825-20206457 (+) |
| Description | Similar to CRN8: Crinkler effector protein 8 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0000281 mitotic cytokinesis Biological Process GO:0007163 establishment or maintenance of cell polarity Biological Process GO:0009267 cellular response to starvation Biological Process GO:0031273 negative regulation of pseudopodium assembly Biological Process GO:0035556 intracellular signal transduction Biological Process GO:0043327 chemotaxis to cAMP Biological Process GO:0043408 regulation of MAPK cascade Biological Process GO:0005576 extracellular region Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0005886 plasma membrane Cellular Component GO:0042025 host cell nucleus Cellular Component |
| KEGG gene cross-reference | ddi:DDB_G0267450 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00069.32Pkinase901-1001 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_035316 | PF00069.32 | Pkinase | 901 | 1001 | 9e-08 | 32.6 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.