LXL04_034245 | RubberDandelionOmics

Gene overview

LXL04_034245

Reference: OH-1004 Chr: Chr07 Coordinates: 92977107-92980255 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1407 bp · LXL04_034245|LXL04_034245|OH1004|cDNA

ATGTTTGTACGAATCACTTACCCGTTCACATTCAACTTGAATTCTCAGAGAAaattgagagagagagagatgagcAGCACACAGTCGCTACACTCGCTAGCCTTCAGGGTAATGCGGCTATGTCGGCCGACGTTCCACATCGAAACCCCGCTCCGATTCGACCTTTCCGATCTCATCGTTGGTGAGGATCTCTTGGACGATCCATCCGCCGCACCTCACCTTCGTCGTCTCCTTCAATCTCAATCCACGACAACTGACTC...

CDS

Download CDS FASTA

1407 bp · LXL04_034245|LXL04_034245|OH1004|CDS

ATGTTTGTACGAATCACTTACCCGTTCACATTCAACTTGAATTCTCAGAGAAAATTGAGAGAGAGAGAGATGAGCAGCACACAGTCGCTACACTCGCTAGCCTTCAGGGTAATGCGGCTATGTCGGCCGACGTTCCACATCGAAACCCCGCTCCGATTCGACCTTTCCGATCTCATCGTTGGTGAGGATCTCTTGGACGATCCATCCGCCGCACCTCACCTTCGTCGTCTCCTTCAATCTCAATCCACGACAACTGACTC...

Protein

Download Protein FASTA

468 aa · LXL04_034245|LXL04_034245|OH1004|PROTEIN

MFVRITYPFTFNLNSQRKLREREMSSTQSLHSLAFRVMRLCRPTFHIETPLRFDLSDLIVGEDLLDDPSAAPHLRRLLQSQSTTTDSSTDLTYSNRFLLRDDPSDAMGLPGMLVLPQAFGAIYLGETFCSYISINNSSSFEVRDIIIKAEIQTERQRILLLDTTKTPVETIRAGGRYDFIVEHDVKELGAHTLVCTAQYSDGDAERKYLPQYFKFMVSNPLSVRTKVRVVKKGKMVIYSQETTYLEACLENNTKSNLFMD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_034245`
TK1151 ID	TkA08G409270
OH-1004 ID	LXL04_034245
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	97.100
Protein coverage (%)	TK1151 100.000 / OH-1004 95.085 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`LXL04_034245`
Location	Chr07:92977107-92980255 (-)
Description	Similar to trappc13: Trafficking protein particle complex subunit 13
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_034245` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport Biological Process GO:0006901 vesicle coating Biological Process GO:0099022 vesicle tethering Biological Process GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:1990072 TRAPPIII protein complex Cellular Component
KEGG gene cross-reference	bta:511108 dre:321203 hsa:80006 pon:100172189 rno:294709 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.488

Rank 1 · LXL04_034245 · OH-1004

Golgi apparatus0.298

Rank 2 · LXL04_034245 · OH-1004

Nucleus0.202

Rank 3 · LXL04_034245 · OH-1004

Endoplasmic reticulum0.148

Rank 4 · LXL04_034245 · OH-1004

Lysosome / Vacuole0.146

Rank 5 · LXL04_034245 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06159.19TRAPPC13_N31-217 aa

PF23647.3TRAPPC13_M221-349 aa

PF23643.2TRAPPC13_C368-456 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_034245	`PF06159.19`	TRAPPC13_N	31	217	1.5e-37	129.9
LXL04_034245	`PF23647.3`	TRAPPC13_M	221	349	2.2e-21	77.3
LXL04_034245	`PF23643.2`	TRAPPC13_C	368	456	1.8e-17	63.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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