LXL04_034090 | RubberDandelionOmics

Gene overview

LXL04_034090

Reference: OH-1004 Chr: Chr07 Coordinates: 80943708-80945666 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

699 bp · LXL04_034090|LXL04_034090|OH1004|cDNA

ATGGGTGACTTCATACACTGTTCACATGCTCATGCTTCCCAAACACGCGAGTTCACCTCCTGCTCCAACATGTCCACTCCCACGAAGATTTATGTGAACGGAAGGTCAACGGCTATGTCGGAAGTTATCAGAAACAAAATCCCCTCGGTTCACGCTTTTGGAACTGCAATTGCCATCGATTCATACAAAATCGGCTCGGTTCACGCTCCGATGGCAACCCTGTATCGATTGAGAGCAGCCGATAGCCCTATCAGAGGCTA...

CDS

Download CDS FASTA

699 bp · LXL04_034090|LXL04_034090|OH1004|CDS

ATGGGTGACTTCATACACTGTTCACATGCTCATGCTTCCCAAACACGCGAGTTCACCTCCTGCTCCAACATGTCCACTCCCACGAAGATTTATGTGAACGGAAGGTCAACGGCTATGTCGGAAGTTATCAGAAACAAAATCCCCTCGGTTCACGCTTTTGGAACTGCAATTGCCATCGATTCATACAAAATCGGCTCGGTTCACGCTCCGATGGCAACCCTGTATCGATTGAGAGCAGCCGATAGCCCTATCAGAGGCTA...

Protein

Download Protein FASTA

232 aa · LXL04_034090|LXL04_034090|OH1004|PROTEIN

MGDFIHCSHAHASQTREFTSCSNMSTPTKIYVNGRSTAMSEVIRNKIPSVHAFGTAIAIDSYKIGSVHAPMATLYRLRAADSPIRGYVVGVEGRNVSDARSLKIEGVKDIIDVASGKGGVGKSTTTVNLAVSLANKCQLSVGLLDADLSRVVSGMFLWGQLGLLDRSGTICHRGYLWKNADLLGCWDHMLLLPSKGYFRYSVTGGICGKMLIFHLILEFDFVSSTFEIILSV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_034090`
TK1151 ID	TkA01G083780
OH-1004 ID	LXL04_034090
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	88.500
Protein coverage (%)	TK1151 92.366 / OH-1004 56.034 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_034090

Location Chr07:80943708-80945666 (-)

Description Similar to mrp: Iron-sulfur cluster carrier protein (Helicobacter pylori (strain J99 / ATCC 700824)

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g19540`	Essential during early vegetative growth.	The evolutionarily conserved iron-sulfur protein INDH is required for complex I assembly and mitochondrial translation in Arabidopsis [corrected].2013 · DOI: 10.1105/tpc.113.117283

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_034090 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0016226 iron-sulfur cluster assembly Biological Process

GO:0032543 mitochondrial translation Biological Process

GO:0032981 mitochondrial respiratory chain complex I assembly Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005743 mitochondrial inner membrane Cellular Component

GO:0005759 mitochondrial matrix Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0005524 ATP binding Molecular Function

GO:0005543 phospholipid binding Molecular Function

GO:0016887 ATP hydrolysis activity Molecular Function

GO:0046872 metal ion binding Molecular Function

GO:0051536 iron-sulfur cluster binding Molecular Function

KEGG gene cross-reference

ath:AT4G19540

ddi:DDB_G0291193

dme:Dmel_CG3262

heo:C694_01035

hpj:jhp_0193

hpy:HP_0207

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.299

Rank 1 · LXL04_034090 · OH-1004

Nucleus0.287

Rank 2 · LXL04_034090 · OH-1004

Mitochondrion0.174

Rank 3 · LXL04_034090 · OH-1004

Plastid0.166

Rank 4 · LXL04_034090 · OH-1004

Cell membrane0.076

Rank 5 · LXL04_034090 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10609.16ParA107-148 aa

PF13614.13AAA_31110-147 aa

PF01656.30CbiA113-149 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_034090	`PF10609.16`	ParA	107	148	3.7e-13	50.2
LXL04_034090	`PF13614.13`	AAA_31	110	147	2.8e-06	28.1
LXL04_034090	`PF01656.30`	CbiA	113	149	9.9e-09	35.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O49472`	Arabidopsis thaliana	Iron-sulfur protein required for NADH dehydrogenase, mitochondrial	75.000%	Swiss-Prot	weak database homology

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