LXL04_032970 | RubberDandelionOmics

Gene overview

LXL04_032970

Reference: OH-1004 Chr: Chr07 Coordinates: 32552887-32556085 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1866 bp · LXL04_032970|LXL04_032970|OH1004|cDNA

ATGGCTACTGCTGGGAAAGCTTTCGAGTTCTATCATGAAGCCAATGACTGGTTTTGTAATGCAGGTTTGCCAAGCGATATCATCGTTGCCATAGACAAAGTAAACTTCCATCTTCACAAGTTTCCTCTTTCTTCGAGATGTGGGAAAATAGATAAATTAATCAAAGAAGCTCAAAATACGGACATTACCCTAGAAGACATTCCTGGTGGGACGAATGCGTTCCTGATCGCAGCTAAGTTCTGCTATGGCGTACGTGTAGA...

CDS

Download CDS FASTA

1866 bp · LXL04_032970|LXL04_032970|OH1004|CDS

ATGGCTACTGCTGGGAAAGCTTTCGAGTTCTATCATGAAGCCAATGACTGGTTTTGTAATGCAGGTTTGCCAAGCGATATCATCGTTGCCATAGACAAAGTAAACTTCCATCTTCACAAGTTTCCTCTTTCTTCGAGATGTGGGAAAATAGATAAATTAATCAAAGAAGCTCAAAATACGGACATTACCCTAGAAGACATTCCTGGTGGGACGAATGCGTTCCTGATCGCAGCTAAGTTCTGCTATGGCGTACGTGTAGA...

Protein

Download Protein FASTA

621 aa · LXL04_032970|LXL04_032970|OH1004|PROTEIN

MATAGKAFEFYHEANDWFCNAGLPSDIIVAIDKVNFHLHKFPLSSRCGKIDKLIKEAQNTDITLEDIPGGTNAFLIAAKFCYGVRVELTPRNIVLVYCVADYLEMFDEYGDDNLFARAENYFHKNVLKNWKDCMVALQSCENFITQADNLQIISKCLNAVSMMACTDPSLFGWPMMMYGRLQSPGGSILWNGINTGARIRSSESDWWFEDVSYLSVPLFVRLMKMMEAKGIRPEKLTGAIMYYSRKYLHGLGRWKGVHTT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_032970`
TK1151 ID	TkA08G217130
OH-1004 ID	LXL04_032970
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	99.700
Protein coverage (%)	TK1151 95.114 / OH-1004 47.021 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_032970

Location Chr07:32552887-32556085 (-)

Description Similar to At3g44820: BTB/POZ domain-containing protein At3g44820

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g44820`	May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release
`At1g30440`	May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release
`At5g03250`	May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release
`At5g13600`	May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release
`At5g66560`	May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_032970 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0016567 protein ubiquitination Biological Process

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT1G30440

ath:AT3G44820

ath:AT5G03250

ath:AT5G13600

ath:AT5G66560

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.440

Rank 1 · LXL04_032970 · OH-1004

Cytoplasm0.391

Rank 2 · LXL04_032970 · OH-1004

Cell membrane0.197

Rank 3 · LXL04_032970 · OH-1004

Endoplasmic reticulum0.051

Rank 4 · LXL04_032970 · OH-1004

Lysosome / Vacuole0.044

Rank 5 · LXL04_032970 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03000.20NPH3205-466 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_032970	`PF03000.20`	NPH3	205	466	2.7e-85	286.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FYC8`	Arabidopsis thaliana	BTB/POZ domain-containing protein At3g44820	55.167%	Swiss-Prot	strong database homology
`Q9S9Q9`	Arabidopsis thaliana	BTB/POZ domain-containing protein At1g30440	44.482%	Swiss-Prot	moderate database homology
`Q9LYW0`	Arabidopsis thaliana	BTB/POZ domain-containing protein At5g03250	41.075%	Swiss-Prot	moderate database homology
`Q9FNB3`	Arabidopsis thaliana	Putative BTB/POZ domain-containing protein At5g13600	40.278%	Swiss-Prot	moderate database homology
`Q94A73`	Arabidopsis thaliana	BTB/POZ domain-containing protein At5g66560	34.909%	Swiss-Prot	moderate database homology

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