Gene Card
Gene overview
cDNA / CDS / Protein Sequences
3174 bp · LXL04_032910|LXL04_032910|OH1004|cDNA
ATGAGGGTGGCAGGACAATCACCACCACCATCTACTCCGCGACAATCAACACCGTCGTCTCCGTCCACATTAACAGCAAAAGATGCGGAATCTCTCTTCCGTACCAAACCTATATCCGAAATCCGAAATGTCGAAGCTGCAACCCGAAAACAGATCCAGGATAAGAGCGAAGAGCTCCGGCAACTTGTCGGCAACCGTTACCGCGATCTGATCGATTCCGCCGATTCAATCGTCAACATGAAGTCATCTTGCCACTCCAT...
3174 bp · LXL04_032910|LXL04_032910|OH1004|CDS
ATGAGGGTGGCAGGACAATCACCACCACCATCTACTCCGCGACAATCAACACCGTCGTCTCCGTCCACATTAACAGCAAAAGATGCGGAATCTCTCTTCCGTACCAAACCTATATCCGAAATCCGAAATGTCGAAGCTGCAACCCGAAAACAGATCCAGGATAAGAGCGAAGAGCTCCGGCAACTTGTCGGCAACCGTTACCGCGATCTGATCGATTCCGCCGATTCAATCGTCAACATGAAGTCATCTTGCCACTCCAT...
Protein
Download Protein FASTA1057 aa · LXL04_032910|LXL04_032910|OH1004|PROTEIN
MRVAGQSPPPSTPRQSTPSSPSTLTAKDAESLFRTKPISEIRNVEAATRKQIQDKSEELRQLVGNRYRDLIDSADSIVNMKSSCHSISANISSVHDGIIHSLSSTTINPNSASSNPARARIYGIACRVKYIVDTPENIWGCLDESMFVDAAARYMRAKLVHHGLTSNDKNKSVLLKFPLLQHQWQIVESFKTQISQRSRERLLLDQAVGLEISAYADALAAVSVIDELNPSQVLKLLLDSRKSCVSQKLGSCKAVSEDVI...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_032910 |
|---|---|
| TK1151 ID | TkA08G213110 |
| OH-1004 ID | LXL04_032910 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 96.600 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_032910 | ||||||
|---|---|---|---|---|---|---|---|
| Location | Chr07:31558206-31561764 (+) | ||||||
| Description | Similar to COG1: Conserved oligomeric Golgi complex subunit 1 | ||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | ||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||
| GO annotations (OH1004 source) | GO:0000301 retrograde transport, vesicle recycling within Golgi Biological Process GO:0006891 intra-Golgi vesicle-mediated transport Biological Process GO:0007030 Golgi organization Biological Process GO:0015031 protein transport Biological Process GO:0000139 Golgi membrane Cellular Component GO:0005794 Golgi apparatus Cellular Component GO:0009536 plastid Cellular Component GO:0017119 Golgi transport complex Cellular Component GO:0032588 trans-Golgi network membrane Cellular Component | ||||||
| KEGG gene cross-reference | ath:AT5G16300 ddi:DDB_G0277691 hsa:9382 mmu:16834 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF08700.18VPS51_Exo84_N27-96 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_032910 | PF08700.18 | VPS51_Exo84_N | 27 | 96 | 8.3e-17 | 61.8 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
| Protein | Organism | Description | Identity | Database | Confidence |
|---|---|---|---|---|---|
Q9FFF3 | Arabidopsis thaliana | Conserved oligomeric Golgi complex subunit 1 | 58.357% | Swiss-Prot | strong database homology |