LXL04_032427 | RubberDandelionOmics

Gene overview

LXL04_032427

Reference: OH-1004 Chr: Chr07 Coordinates: 22553652-22554276 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

438 bp · LXL04_032427|LXL04_032427|OH1004|cDNA

ATGGTGATGACAATCAACTGCTGTATCAGCCCACGGCCACCCATAGCTCCTCCGGCCACCATAGCCACCTCCCAACCTCCGTCATCCGTCAGACCAAAGAAGGAGGTTTCTTGGAAGAACCAATGTGTAGTTGGGATGGCATGTGTGATGATTGGACTACAAATGGAGGGCATAGTTGGTAATAACCATGACTACGCGGTTGCAATTGAGCCAAAGGTGGCGGTGGAGTCGAAGGTAAAGGGGAGGAGGTGGAGTGGTAA...

CDS

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438 bp · LXL04_032427|LXL04_032427|OH1004|CDS

ATGGTGATGACAATCAACTGCTGTATCAGCCCACGGCCACCCATAGCTCCTCCGGCCACCATAGCCACCTCCCAACCTCCGTCATCCGTCAGACCAAAGAAGGAGGTTTCTTGGAAGAACCAATGTGTAGTTGGGATGGCATGTGTGATGATTGGACTACAAATGGAGGGCATAGTTGGTAATAACCATGACTACGCGGTTGCAATTGAGCCAAAGGTGGCGGTGGAGTCGAAGGTAAAGGGGAGGAGGTGGAGTGGTAA...

Protein

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145 aa · LXL04_032427|LXL04_032427|OH1004|PROTEIN

MVMTINCCISPRPPIAPPATIATSQPPSSVRPKKEVSWKNQCVVGMACVMIGLQMEGIVGNNHDYAVAIEPKVAVESKVKGRRWSGKRICPAWQLNSLETIVPEDLPRPSHKRRWEKIGDHSRVAPPVKSSTTTITAASSDCFSM

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_032427`
TK1151 ID	TkA08G174020
OH-1004 ID	LXL04_032427
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	96.600
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_032427

Location Chr07:22553652-22554276 (+)

Description Protein of unknown function

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g25625`	Triggers stress-induced chloroplast degradation, independently of autophagy and senescence-associated vacuoles.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_032427 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006979 response to oxidative stress Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009735 response to cytokinin Biological Process

GO:0010150 leaf senescence Biological Process

GO:1902074 response to salt Biological Process

GO:1904821 chloroplast disassembly Biological Process

GO:0005773 vacuole Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0031969 chloroplast membrane Cellular Component

GO:0097708 intracellular vesicle Cellular Component

KEGG gene cross-reference

ath:AT2G25625

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.848

Rank 1 · LXL04_032427 · OH-1004

Nucleus0.105

Rank 2 · LXL04_032427 · OH-1004

Mitochondrion0.071

Rank 3 · LXL04_032427 · OH-1004

Cytoplasm0.031

Rank 4 · LXL04_032427 · OH-1004

Cell membrane0.025

Rank 5 · LXL04_032427 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8S8K8`	Arabidopsis thaliana	Protein CHLOROPLAST VESICULATION	37.342%	Swiss-Prot	moderate database homology

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