LXL04_031801 | RubberDandelionOmics

Gene overview

LXL04_031801

Reference: OH-1004 Chr: Chr07 Coordinates: 11471281-11473883 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1080 bp · LXL04_031801|LXL04_031801|OH1004|cDNA

ATGGTGATGATGGATATGATAAATTCAGTGCTTAATTGGGTTGTACCGCCTGCAAGTCTGGTGATGCTGGCGTTCTCATGGCCGGCGCTTACATTCATCAACACCTGTGAATGGCTTTACTATTCTTTCGTTGATGAAGATATGAATGACAAAGTTGTCATCGTCACTGGCGCTTCTTCTGGTATCGGCGAGCAAATCGCGTATGAATATGCGAAGAAGAGAGCAAATCTGGTATTAGTCGCACGGAGAGATCAGCGACT...

CDS

Download CDS FASTA

1080 bp · LXL04_031801|LXL04_031801|OH1004|CDS

ATGGTGATGATGGATATGATAAATTCAGTGCTTAATTGGGTTGTACCGCCTGCAAGTCTGGTGATGCTGGCGTTCTCATGGCCGGCGCTTACATTCATCAACACCTGTGAATGGCTTTACTATTCTTTCGTTGATGAAGATATGAATGACAAAGTTGTCATCGTCACTGGCGCTTCTTCTGGTATCGGCGAGCAAATCGCGTATGAATATGCGAAGAAGAGAGCAAATCTGGTATTAGTCGCACGGAGAGATCAGCGACT...

Protein

Download Protein FASTA

359 aa · LXL04_031801|LXL04_031801|OH1004|PROTEIN

MVMMDMINSVLNWVVPPASLVMLAFSWPALTFINTCEWLYYSFVDEDMNDKVVIVTGASSGIGEQIAYEYAKKRANLVLVARRDQRLHGISENAKRLGAPNVLIMAADVVKEDDCRRFVNETINYYGRIDHLVNTASLGHTFYFEEANDASVFPILMDINFWGNVYPTYVALPYLRKSHGRIVVNAAVENWLPLPRMSIYSAAKAALVNFYETLRLELNGDVGITIATHGWIGAEMARGKFMLEEGAEMQWKEEREVHAA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_031801`
TK1151 ID	TkA08G130690
OH-1004 ID	LXL04_031801
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.200
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_031801

Location Chr07:11471281-11473883 (-)

Description Similar to SOP3: 11-beta-hydroxysteroid dehydrogenase B

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g10020`	11-beta-hydroxysteroid dehydrogenase-like 5.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_031801 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006694 steroid biosynthetic process Biological Process

GO:0008202 steroid metabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005811 lipid droplet Cellular Component

GO:0005829 cytosol Cellular Component

GO:0012511 monolayer-surrounded lipid storage body Cellular Component

GO:0016020 membrane Cellular Component

GO:0004303 estradiol 17-beta-dehydrogenase [NAD(P)+] activity Molecular Function

GO:0016491 oxidoreductase activity Molecular Function

GO:0050661 NADP binding Molecular Function

GO:0070524 11-beta-hydroxysteroid dehydrogenase (NADP+) activity Molecular Function

GO:0072582 17-beta-hydroxysteroid dehydrogenase (NADP+) activity Molecular Function

KEGG gene cross-reference

ath:AT4G10020

sind:105175113

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.418

Rank 1 · LXL04_031801 · OH-1004

Golgi apparatus0.184

Rank 2 · LXL04_031801 · OH-1004

Cytoplasm0.137

Rank 3 · LXL04_031801 · OH-1004

Mitochondrion0.122

Rank 4 · LXL04_031801 · OH-1004

Nucleus0.119

Rank 5 · LXL04_031801 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00106.32adh_short51-238 aa

PF08659.17KR53-151 aa

PF13561.13adh_short_C257-263 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_031801	`PF00106.32`	adh_short	51	238	3.8e-36	125.1
LXL04_031801	`PF08659.17`	KR	53	151	6.1e-06	27.0
LXL04_031801	`PF13561.13`	adh_short_C2	57	263	2.5e-21	77.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9T0G0`	Arabidopsis thaliana	11-beta-hydroxysteroid dehydrogenase-like 5	69.034%	Swiss-Prot	strong database homology

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