LXL04_031734 | RubberDandelionOmics

Gene overview

LXL04_031734

Reference: OH-1004 Chr: Chr07 Coordinates: 10442447-10444770 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1356 bp · LXL04_031734|LXL04_031734|OH1004|cDNA

ATGCCTCACACAATAGATGTTAACGGCACAAAGTTAACAGACATTGACATAAGGACCCCTGGTGTACAAAAGGTTTCGAAAAAGACTCCTGGTgttataaaacttaaaaaaggACCTATTAAAAATGGCGGCATCTTCCTTCATTATATTACTTACAACAATCTCACCCCATTTCACCACCATCAATCTCCGCCTCATTCTTCTGACCAGGAGAACAACTTAGGAGTGAGAGTTACTCGTCAGGCGAAGAAGAGGGCCAT...

CDS

Download CDS FASTA

1356 bp · LXL04_031734|LXL04_031734|OH1004|CDS

ATGCCTCACACAATAGATGTTAACGGCACAAAGTTAACAGACATTGACATAAGGACCCCTGGTGTACAAAAGGTTTCGAAAAAGACTCCTGGTGTTATAAAACTTAAAAAAGGACCTATTAAAAATGGCGGCATCTTCCTTCATTATATTACTTACAACAATCTCACCCCATTTCACCACCATCAATCTCCGCCTCATTCTTCTGACCAGGAGAACAACTTAGGAGTGAGAGTTACTCGTCAGGCGAAGAAGAGGGCCAT...

Protein

Download Protein FASTA

451 aa · LXL04_031734|LXL04_031734|OH1004|PROTEIN

MPHTIDVNGTKLTDIDIRTPGVQKVSKKTPGVIKLKKGPIKNGGIFLHYITYNNLTPFHHHQSPPHSSDQENNLGVRVTRQAKKRAMESIGSQFQPANKKRVVLGELSSNVVTSENPKAGSDIVEKTKCGSKKVKKAVKAVIPEAKKHELATEKMDDAAVDPQMCEAYVSDIYEYLHNMEMEAKRIPLSDYVEKVQKDVTVNMRGVLVDWLVEVAEEYKLLPDTLYLTISYIDRFLSVNLLNRQRLQLLGVSSMLIASKY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_031734`
TK1151 ID	TkA08G126760
OH-1004 ID	LXL04_031734
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	98.100
Protein coverage (%)	TK1151 96.505 / OH-1004 79.601 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_031734

Location Chr07:10442447-10444770 (-)

Description Similar to CYCA3-1: Putative cyclin-A3-1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g43080`	Putative cyclin-A3-1.	No verified direct reference in this release
`At1g47230`	Cyclin-A3-4.	No verified direct reference in this release
`At1g47210`	Cyclin-A3-2.	No verified direct reference in this release
`At1g47220`	Cyclin-A3-3.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031734 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000082 G1/S transition of mitotic cell cycle Biological Process

GO:0051301 cell division Biological Process

GO:0000307 cyclin-dependent protein kinase holoenzyme complex Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity Molecular Function

KEGG gene cross-reference

ath:AT1G47210

ath:AT1G47220

ath:AT1G47230

ath:AT5G43080

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.805

Rank 1 · LXL04_031734 · OH-1004

Cytoplasm0.252

Rank 2 · LXL04_031734 · OH-1004

Mitochondrion0.047

Rank 3 · LXL04_031734 · OH-1004

Cell membrane0.026

Rank 4 · LXL04_031734 · OH-1004

Endoplasmic reticulum0.014

Rank 5 · LXL04_031734 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00134.29Cyclin_N171-299 aa

PF02984.25Cyclin_C302-423 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_031734	`PF00134.29`	Cyclin_N	171	299	1.1e-46	158.4
LXL04_031734	`PF02984.25`	Cyclin_C	302	423	9.9e-36	123.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FMH5`	Arabidopsis thaliana	Putative cyclin-A3-1	59.003%	Swiss-Prot	strong database homology
`Q3ECW2`	Arabidopsis thaliana	Cyclin-A3-4	56.825%	Swiss-Prot	strong database homology
`Q9C6A9`	Arabidopsis thaliana	Cyclin-A3-2	55.372%	Swiss-Prot	strong database homology
`A0MEB5`	Arabidopsis thaliana	Cyclin-A3-3	60.448%	Swiss-Prot	moderate database homology

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