LXL04_031699 | RubberDandelionOmics

Gene overview

LXL04_031699

Reference: OH-1004 Chr: Chr07 Coordinates: 9781558-9784454 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1626 bp · LXL04_031699|LXL04_031699|OH1004|cDNA

ATGGAGGTTAAACACATCTCAGATTGCTTCGTGAAACCCAAATTTGTATCAGAAGAGGCTAAGAAACCTATTTACTTCTCACCATGGGATCTAGCCATGATTAATGTAAATTACATCCAAAAGGGTCTCCTTTTCCCCCGGCCGGAAAATCAAGACTTCTCCATAACCACATTCTTGGAGGACCTCAAAGACGCTCTCTCCACCACGCTTACTCATTTCCACCCACTCGCCGCCCGCTTAGCCACCATAAAACAAGAAAG...

CDS

Download CDS FASTA

1626 bp · LXL04_031699|LXL04_031699|OH1004|CDS

ATGGAGGTTAAACACATCTCAGATTGCTTCGTGAAACCCAAATTTGTATCAGAAGAGGCTAAGAAACCTATTTACTTCTCACCATGGGATCTAGCCATGATTAATGTAAATTACATCCAAAAGGGTCTCCTTTTCCCCCGGCCGGAAAATCAAGACTTCTCCATAACCACATTCTTGGAGGACCTCAAAGACGCTCTCTCCACCACGCTTACTCATTTCCACCCACTCGCCGCCCGCTTAGCCACCATAAAACAAGAAAG...

Protein

Download Protein FASTA

541 aa · LXL04_031699|LXL04_031699|OH1004|PROTEIN

MEVKHISDCFVKPKFVSEEAKKPIYFSPWDLAMINVNYIQKGLLFPRPENQDFSITTFLEDLKDALSTTLTHFHPLAARLATIKQESPPSCIVYLNPENSPGARFIHSAVNITVAEILTPVDVPVIVQSFFDHHKAIDHDGHHMSLLSIQVTELADGIFIGCSINHMVVDGSSYWHFFNSFSEVFRSKAQNGDLVPISRPPVVQRWIPEGSDPIFTLPFTHEDQFIDRPNPPLLRERIFHFSPASLSKLKAKSTLPPVDK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_031699`
TK1151 ID	TkA08G124330
OH-1004 ID	LXL04_031699
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	78.000
Protein coverage (%)	TK1151 100.000 / OH-1004 94.085 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_031699

Location Chr07:9781558-9784454 (-)

Description Similar to At3g50280: Uncharacterized acetyltransferase At3g50280

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g50280`	Uncharacterized acetyltransferase At3g50280.	No verified direct reference in this release
`At5g67160`	Required for pathogen-induced salicylic acid (SA) accumulation and SA-mediated resistance to virulent and avirulent pathogens (e.g. P.syringae).	An important role of a BAHD acyl transferase-like protein in plant innate immunity.2009 · DOI: 10.1111/j.1365-313x.2008.03747.x
`At5g23940`	Required for incorporation of 9(10),16-dihydroxy-hexadecanoic acid into cutin.	No verified direct reference in this release
`At2g19070`	Hydroxycinnamoyl transferase involved in the conjugation of feruloyl CoA to spermidine.	A BAHD acyltransferase is expressed in the tapetum of Arabidopsis anthers and is involved in the synthesis of hydroxycinnamoyl spermidines.2009 · DOI: 10.1111/j.1365-313x.2008.03773.x

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031699 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0009617 response to bacterium Biological Process

GO:0009697 salicylic acid biosynthetic process Biological Process

GO:0009753 response to jasmonic acid Biological Process

GO:0010090 trichome morphogenesis Biological Process

GO:0010143 cutin biosynthetic process Biological Process

GO:0090626 plant epidermis morphogenesis Biological Process

GO:1900150 regulation of defense response to fungus Biological Process

GO:1900424 regulation of defense response to bacterium Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups Molecular Function

KEGG gene cross-reference

ath:AT3G50280

ath:AT5G23940

ath:AT5G67160

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.634

Rank 1 · LXL04_031699 · OH-1004

Nucleus0.372

Rank 2 · LXL04_031699 · OH-1004

Endoplasmic reticulum0.099

Rank 3 · LXL04_031699 · OH-1004

Cell membrane0.079

Rank 4 · LXL04_031699 · OH-1004

Plastid0.053

Rank 5 · LXL04_031699 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02458.21Transferase3-533 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_031699	`PF02458.21`	Transferase	3	533	1.3e-63	215.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SND9`	Arabidopsis thaliana	Uncharacterized acetyltransferase At3g50280	34.252%	Swiss-Prot	weak database homology
`Q9FH97`	Arabidopsis thaliana	Protein ENHANCED PSEUDOMONAS SUSCEPTIBILITY 1	35.071%	Swiss-Prot	weak database homology
`Q9FF86`	Arabidopsis thaliana	BAHD acyltransferase DCR	36.413%	Swiss-Prot	weak database homology
`O64470`	Arabidopsis thaliana	Spermidine hydroxycinnamoyl transferase	25.532%	Swiss-Prot	weak database homology

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