LXL04_031564 | RubberDandelionOmics

Gene overview

LXL04_031564

Reference: OH-1004 Chr: Chr07 Coordinates: 7707846-7709941 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1052 bp · LXL04_031564|LXL04_031564|OH1004|cDNA

AATTCGCTATTCTCCCATAACACGCATATATTCTGGTACTACTTCACTAATCGTGTCCACCACCACCAACAACCAAACAACCCTCCTCTTCCCTAGAGAAACAAAATTTGCAGGAAGAACACATGGCAACGGAGATCAGCAAGATTCTGGTGATTGGAGGAACTGGGTACATCGGAAAGTTTGTGGTGGACGCTAGTGCAAAGGCCGGTCACCCAACCTACGTTCTGGTTCGAGAATCCACGGTGTCGGATCCTGTGAAG...

CDS

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945 bp · LXL04_031564|LXL04_031564|OH1004|CDS

TTGCAGGAAGAACACATGGCAACGGAGATCAGCAAGATTCTGGTGATTGGAGGAACTGGGTACATCGGAAAGTTTGTGGTGGACGCTAGTGCAAAGGCCGGTCACCCAACCTACGTTCTGGTTCGAGAATCCACGGTGTCGGATCCTGTGAAGGGTAAGCTTGTCCAGAGCTTCAAGAACTCCGGCGTCAATCTGGTTTACGGTGATCTGAACGATCATGAAAGCTTGGTGAAGGCGATTAAGAAGGTTGATGTGGTGAT...

Protein

Download Protein FASTA

314 aa · LXL04_031564|LXL04_031564|OH1004|PROTEIN

MQEEHMATEISKILVIGGTGYIGKFVVDASAKAGHPTYVLVRESTVSDPVKGKLVQSFKNSGVNLVYGDLNDHESLVKAIKKVDVVISTVGNMQIPDQTKIIAAIKEAGNVKRFFPSEFGVDVDRQNAVEPASSTFSGKVQIRRAIEAEGIPFTYVASGCFAGYFLPTMVQPGATAPPRDKVTILGDGSPKVVYNEEHDIGTYTIKAVDDPRTLNKILYIKPPNNTLSFNDLVSLWEKKIDKSLEKDFVPEEQVLKLIQE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_031564`
TK1151 ID	TkA08G114520
OH-1004 ID	LXL04_031564
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 98.408 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_031564

Location Chr07:7707846-7709941 (-)

Description Similar to TP7: Phenylcoumaran benzylic ether reductase TP7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g75280`	Isoflavone reductase homolog P3.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_031564 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006979 response to oxidative stress Biological Process

GO:0009699 phenylpropanoid biosynthetic process Biological Process

GO:0009807 lignan biosynthetic process Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0000166 nucleotide binding Molecular Function

GO:0016491 oxidoreductase activity Molecular Function

GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor Molecular Function

KEGG gene cross-reference

ath:AT1G75280

nta:107822129

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.805

Rank 1 · LXL04_031564 · OH-1004

Nucleus0.213

Rank 2 · LXL04_031564 · OH-1004

Endoplasmic reticulum0.075

Rank 3 · LXL04_031564 · OH-1004

Cell membrane0.055

Rank 4 · LXL04_031564 · OH-1004

Peroxisome0.045

Rank 5 · LXL04_031564 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05368.20NmrA11-310 aa

PF01370.28Epimerase13-97 aa

PF03435.25Sacchrp_dh_NADP13-99 aa

PF16363.12GDP_Man_Dehyd14-85 aa

PF01073.263Beta_HSD14-95 aa

PF13460.13NAD_binding_1017-159 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_031564	`PF05368.20`	NmrA	11	310	3e-98	329.8
LXL04_031564	`PF01370.28`	Epimerase	13	97	3.2e-10	40.6
LXL04_031564	`PF03435.25`	Sacchrp_dh_NADP	13	99	6.4e-06	27.2
LXL04_031564	`PF16363.12`	GDP_Man_Dehyd	14	85	4.1e-07	30.5
LXL04_031564	`PF01073.26`	3Beta_HSD	14	95	2.2e-06	27.7
LXL04_031564	`PF13460.13`	NAD_binding_10	17	159	4.8e-14	53.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`P52577`	Arabidopsis thaliana	Isoflavone reductase homolog P3	76.452%	Swiss-Prot	strong database homology

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