LXL04_031462 | RubberDandelionOmics

Gene overview

LXL04_031462

Reference: OH-1004 Chr: Chr07 Coordinates: 6265376-6266831 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

834 bp · LXL04_031462|LXL04_031462|OH1004|cDNA

ATGGCCTCTTTCTCTGTTCCTTGCCCCAAGACTTCCGCCCTACTCGCACCTCACTCCAACCCTAAGCAAAACCCCAACCACCGTAAGACCTCCATTCTCCTCTTCAAATCCGATTTCAAACACCTCCGCGCTTTGGTTTCAGGATCACCGTCTCACGGATTTCAGGCAACTAAGAGGAACCAGAATGGTGTTATGAAAGTGTCTGCTCAACTCAATGAGATTTCTATTGGGGAATCGTCAAATTCTGGACCACTATCAGA...

CDS

Download CDS FASTA

834 bp · LXL04_031462|LXL04_031462|OH1004|CDS

ATGGCCTCTTTCTCTGTTCCTTGCCCCAAGACTTCCGCCCTACTCGCACCTCACTCCAACCCTAAGCAAAACCCCAACCACCGTAAGACCTCCATTCTCCTCTTCAAATCCGATTTCAAACACCTCCGCGCTTTGGTTTCAGGATCACCGTCTCACGGATTTCAGGCAACTAAGAGGAACCAGAATGGTGTTATGAAAGTGTCTGCTCAACTCAATGAGATTTCTATTGGGGAATCGTCAAATTCTGGACCACTATCAGA...

Protein

Download Protein FASTA

277 aa · LXL04_031462|LXL04_031462|OH1004|PROTEIN

MASFSVPCPKTSALLAPHSNPKQNPNHRKTSILLFKSDFKHLRALVSGSPSHGFQATKRNQNGVMKVSAQLNEISIGESSNSGPLSEDSDESSNISSSETTVPDVESITAFMNQVAGLVELVDSRDIMELKLKQEDREVIIRKKEALAPPPMVMMQSQQPQAMYHSQPPPQQAATPPPSAAAPPASPPALLPPAKPKSSRPPLKSPMAGTFYRAPAPGAPSFVKVGDKVQKGQVICIIEAMKLMNEIEADQSGTVVDIIA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_031462`
TK1151 ID	TkA08G107940
OH-1004 ID	LXL04_031462
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.300
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_031462

Location Chr07:6265376-6266831 (+)

Description Similar to BCCP2: Biotin carboxyl carrier protein of acetyl-CoA carboxylase 2, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g16390`	This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.	No verified direct reference in this release
`At5g15530`	This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_031462 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006633 fatty acid biosynthetic process Biological Process

GO:2001295 malonyl-CoA biosynthetic process Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009317 acetyl-CoA carboxylase complex Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0003989 acetyl-CoA carboxylase activity Molecular Function

GO:0009374 biotin binding Molecular Function

GO:0060090 molecular adaptor activity Molecular Function

KEGG gene cross-reference

ath:AT5G15530

ath:AT5G16390

ecj:JW3223

eco:b3255

ecoc:C3026_17710

gmx:548072

sfl:SF3293

sfx:S3510

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.980

Rank 1 · LXL04_031462 · OH-1004

Mitochondrion0.026

Rank 2 · LXL04_031462 · OH-1004

Nucleus0.024

Rank 3 · LXL04_031462 · OH-1004

Cytoplasm0.019

Rank 4 · LXL04_031462 · OH-1004

Cell membrane0.011

Rank 5 · LXL04_031462 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00364.29Biotin_lipoyl203-275 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_031462	`PF00364.29`	Biotin_lipoyl	203	275	1.6e-24	86.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q42533`	Arabidopsis thaliana	Biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic	57.658%	Swiss-Prot	strong database homology
`Q9LLC1`	Arabidopsis thaliana	Biotin carboxyl carrier protein of acetyl-CoA carboxylase 2, chloroplastic	44.257%	Swiss-Prot	moderate database homology

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