LXL04_031459 | RubberDandelionOmics

Gene overview

LXL04_031459

Reference: OH-1004 Chr: Chr07 Coordinates: 6245839-6247632 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

786 bp · LXL04_031459|LXL04_031459|OH1004|cDNA

ATGGGTTGCGCTGCCAGCAATTCTGCTGATTCCAAAGCCGACCGACTGTCACGGTGGAGCGCCACCGGCATTGTAGGCTTACGCGACGCCAAATTAAAGTCGTTTCCAGATGAAGTTCTCGAGCTAGATAGATCAGTACGGACTCTTGATTTGACACACAACAAATTAGCTGACATTCCAGAAGATATCAGCAGATTATCAAACATGCAGAGGCTGATAATGGCTGATAATATAATCGCGCGTCTTCCAGGGAATATCGG...

CDS

Download CDS FASTA

786 bp · LXL04_031459|LXL04_031459|OH1004|CDS

ATGGGTTGCGCTGCCAGCAATTCTGCTGATTCCAAAGCCGACCGACTGTCACGGTGGAGCGCCACCGGCATTGTAGGCTTACGCGACGCCAAATTAAAGTCGTTTCCAGATGAAGTTCTCGAGCTAGATAGATCAGTACGGACTCTTGATTTGACACACAACAAATTAGCTGACATTCCAGAAGATATCAGCAGATTATCAAACATGCAGAGGCTGATAATGGCTGATAATATAATCGCGCGTCTTCCAGGGAATATCGG...

Protein

Download Protein FASTA

261 aa · LXL04_031459|LXL04_031459|OH1004|PROTEIN

MGCAASNSADSKADRLSRWSATGIVGLRDAKLKSFPDEVLELDRSVRTLDLTHNKLADIPEDISRLSNMQRLIMADNIIARLPGNIGKLQSLKLLNLDKNRFTFLPDELGQLVKLERLSISGNQLTTLPDTIGSLRNLLLLNVSNNQLKFLPESIGSCFSLEELQANDNSIEELPPSVCNLVHLKSVCLDRNKVKQMPPNLLKECKTLQNISVHDNPISMDQFQSMEGFEEFEARRKKKFDKKIDANVMMGSKGLDEGVD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_031459`
TK1151 ID	TkA08G107870
OH-1004 ID	LXL04_031459
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_031459

Location Chr07:6245839-6247632 (-)

Description Similar to IRL7: Plant intracellular Ras-group-related LRR protein 7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g30105`	LRR repeats and ubiquitin-like domain-containing protein At2g30105.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0212200`	Leucine-rich repeat protein that likely mediates protein interactions, possibly in the context of signal transduction.	No verified direct reference in this release
`Os10g0456200`	Leucine-rich repeat protein that likely mediates protein interactions, possibly in the context of signal transduction.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031459 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0032495 response to muramyl dipeptide Biological Process

GO:0032496 response to lipopolysaccharide Biological Process

GO:0035556 intracellular signal transduction Biological Process

GO:0070433 negative regulation of nucleotide-binding oligomerization domain containing 2 signaling pathway Biological Process

GO:0071356 cellular response to tumor necrosis factor Biological Process

GO:0071638 negative regulation of monocyte chemotactic protein-1 production Biological Process

GO:0099072 regulation of postsynaptic membrane neurotransmitter receptor levels Biological Process

GO:0005604 basement membrane Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009925 basal plasma membrane Cellular Component

KEGG gene cross-reference

ath:AT2G30105

dosa:Os03g0212200

dosa:Os10g0456200

hsa:55914

xla:432302

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.643

Rank 1 · LXL04_031459 · OH-1004

Nucleus0.261

Rank 2 · LXL04_031459 · OH-1004

Cell membrane0.199

Rank 3 · LXL04_031459 · OH-1004

Golgi apparatus0.098

Rank 4 · LXL04_031459 · OH-1004

Endoplasmic reticulum0.072

Rank 5 · LXL04_031459 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23598.2LRR_1425-97 aa

PF12799.14LRR_445-82 aa

PF13855.13LRR_868-125 aa

PF23598.2LRR_1485-166 aa

PF23211.1LRR_LRWD185-148 aa

PF12799.14LRR_490-129 aa

PF13855.13LRR_891-148 aa

PF12799.14LRR_4114-151 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_031459	`PF23598.2`	LRR_14	25	97	1.3e-26	93.9
LXL04_031459	`PF12799.14`	LRR_4	45	82	2.5e-16	60.1
LXL04_031459	`PF13855.13`	LRR_8	68	125	1.6e-23	82.9
LXL04_031459	`PF23598.2`	LRR_14	85	166	1.3e-26	93.9
LXL04_031459	`PF23211.1`	LRR_LRWD1	85	148	7.9e-06	26.4
LXL04_031459	`PF12799.14`	LRR_4	90	129	2.5e-16	60.1
LXL04_031459	`PF13855.13`	LRR_8	91	148	1.6e-23	82.9
LXL04_031459	`PF12799.14`	LRR_4	114	151	2.5e-16	60.1
LXL04_031459	`PF13855.13`	LRR_8	115	171	1.6e-23	82.9
LXL04_031459	`PF23598.2`	LRR_14	141	216	1.3e-26	93.9
LXL04_031459	`PF12799.14`	LRR_4	160	198	2.5e-16	60.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P0C895`	Arabidopsis thaliana	LRR repeats and ubiquitin-like domain-containing protein At2g30105	36.255%	Swiss-Prot	moderate database homology
`B9F655`	Oryza sativa subsp. japonica	Plant intracellular Ras-group-related LRR protein 7	63.218%	Swiss-Prot	strong database homology
`Q7XDQ7`	Oryza sativa subsp. japonica	Plant intracellular Ras-group-related LRR protein 8	38.645%	Swiss-Prot	moderate database homology

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