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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_031452
Reference: OH-1004 Chr: Chr07 Coordinates: 6170217-6173552 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3249 bp · LXL04_031452|LXL04_031452|OH1004|cDNA

ATGGCAGCAAAGAGGATTACAATGATCCTTTTCCTGATTTTAATCTCAgGAAAGGATGCAATTGGAGACTCGCTGGATTCCGATAAGGAAGTACTTCTCAATCTCAAGTCATTTTTGGAACAAAAGAACAAAGTGAATCAAGGAGACTATAGGAAATGGGACCCGCTATCTCAGACGCCGTGCAATTGGCCGGGGATTTCGTGTTCCGGGAATCGAGTAACCGGAATCAGCCTCCCTGACAACGACATAGCTGGTAATTT...

CDS

Download CDS FASTA

3249 bp · LXL04_031452|LXL04_031452|OH1004|CDS

ATGGCAGCAAAGAGGATTACAATGATCCTTTTCCTGATTTTAATCTCAGGAAAGGATGCAATTGGAGACTCGCTGGATTCCGATAAGGAAGTACTTCTCAATCTCAAGTCATTTTTGGAACAAAAGAACAAAGTGAATCAAGGAGACTATAGGAAATGGGACCCGCTATCTCAGACGCCGTGCAATTGGCCGGGGATTTCGTGTTCCGGGAATCGAGTAACCGGAATCAGCCTCCCTGACAACGACATAGCTGGTAATTT...

Protein

Download Protein FASTA

1082 aa · LXL04_031452|LXL04_031452|OH1004|PROTEIN

MAAKRITMILFLILISGKDAIGDSLDSDKEVLLNLKSFLEQKNKVNQGDYRKWDPLSQTPCNWPGISCSGNRVTGISLPDNDIAGNFFGNFSALTELTHLDLSTNTIDGTIPPDLGSCRNLKALNLSHNIIGGELNLTGLSSLEIIDLSMNRFSGDIMMSIPRVCDALVVANLSANHFTGEITTSMDVCPKLEYVDVSSNLLTGNLWFGINRFTEFSVSENIVNGTLPAWIFRENCSLQALDLSGNALVGGIPKEISNCR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_031452
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_031452
LocationChr07:6170217-6173552 (+)
DescriptionSimilar to At1g74360: Probable LRR receptor-like serine/threonine-protein kinase At1g74360
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g74360 Probable LRR receptor-like serine/threonine-protein kinase At1g74360. No verified direct reference in this release
At4g39400 Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates.
Brassinosteroid-insensitive dwarf mutants of Arabidopsis accumulate brassinosteroids.1999 · DOI: 10.1104/pp.121.3.743
Brassinosteroid-insensitive-1 is a ubiquitously expressed leucine-rich repeat receptor serine/threonine kinase.2000 · DOI: 10.1104/pp.123.4.1247
The Arabidopsis transthyretin-like protein is a potential substrate of BRASSINOSTEROID-INSENSITIVE 1.2004 · DOI: 10.1105/tpc.104.023903
The Arabidopsis thaliana brassinosteroid receptor (AtBRI1) contains a domain that functions as a guanylyl cyclase in vitro.2007 · DOI: 10.1371/journal.pone.0000449
BSKs mediate signal transduction from the receptor kinase BRI1 in Arabidopsis.2008 · DOI: 10.1126/science.1156973
Tyrosine phosphorylation of the BRI1 receptor kinase emerges as a component of brassinosteroid signaling in Arabidopsis.2009 · DOI: 10.1073/pnas.0810249106
BSKs are partially redundant positive regulators of brassinosteroid signaling in Arabidopsis.2013 · DOI: 10.1111/tpj.12175
At1g55610 Receptor with a serine/threonine-protein kinase activity.
BRL1, a leucine-rich repeat receptor-like protein kinase, is functionally redundant with BRI1 in regulating Arabidopsis brassinosteroid signaling.2004 · DOI: 10.1111/j.1365-313x.2004.02214.x
BRL1 and BRL3 are novel brassinosteroid receptors that function in vascular differentiation in Arabidopsis.2004 · DOI: 10.1242/dev.01403

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_031452 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0001578 microtubule bundle formation Biological Process
GO:0002215 defense response to nematode Biological Process
GO:0009414 response to water deprivation Biological Process
GO:0009416 response to light stimulus Biological Process
GO:0009647 skotomorphogenesis Biological Process
GO:0009729 detection of brassinosteroid stimulus Biological Process
GO:0009742 brassinosteroid mediated signaling pathway Biological Process
GO:0009755 hormone-mediated signaling pathway Biological Process
GO:0009791 post-embryonic development Biological Process
GO:0009825 multidimensional cell growth Biological Process
GO:0009845 seed germination Biological Process
GO:0009911 positive regulation of flower development Biological Process
KEGG gene cross-reference
ath:AT1G55610
ath:AT1G74360
ath:AT4G39400
sly:101261320
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.868
Rank 1 · LXL04_031452 · OH-1004
Endoplasmic reticulum0.084
Rank 2 · LXL04_031452 · OH-1004
Cytoplasm0.067
Rank 3 · LXL04_031452 · OH-1004
Nucleus0.047
Rank 4 · LXL04_031452 · OH-1004
Lysosome / Vacuole0.025
Rank 5 · LXL04_031452 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08263.18LRRNT_226-69 aa
PF13855.13LRR_877-129 aa
PF13855.13LRR_8231-270 aa
PF23598.2LRR_14240-361 aa
PF13855.13LRR_8284-342 aa
PF12799.14LRR_4284-326 aa
PF13855.13LRR_8334-393 aa
PF23598.2LRR_14376-463 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_031452PF08263.18LRRNT_226698.3e-0729.9
LXL04_031452PF13855.13LRR_8771293.8e-35120.2
LXL04_031452PF13855.13LRR_82312703.8e-35120.2
LXL04_031452PF23598.2LRR_142403611.1e-28100.8
LXL04_031452PF13855.13LRR_82843423.8e-35120.2
LXL04_031452PF12799.14LRR_42843261.4e-32111.7
LXL04_031452PF13855.13LRR_83343933.8e-35120.2
LXL04_031452PF23598.2LRR_143764631.1e-28100.8
LXL04_031452PF12799.14LRR_43824221.4e-32111.7
LXL04_031452PF13855.13LRR_84054653.8e-35120.2
LXL04_031452PF23598.2LRR_145566571.1e-28100.8
LXL04_031452PF00069.32Pkinase79510001.8e-43149.5
LXL04_031452PF07714.24PK_Tyr_Ser-Thr79710605.9e-41141.2
LXL04_031452PF03109.23ABC18639461.1e-0835.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
C0LGJ1Arabidopsis thalianaProbable LRR receptor-like serine/threonine-protein kinase At1g7436062.030%Swiss-Protstrong database homology
O22476Arabidopsis thalianaProtein BRASSINOSTEROID INSENSITIVE 133.646%Swiss-Protmoderate database homology
Q9ZWC8Arabidopsis thalianaSerine/threonine-protein kinase BRI1-like 131.709%Swiss-Protmoderate database homology

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