LXL04_031234 | RubberDandelionOmics

Gene overview

LXL04_031234

Reference: OH-1004 Chr: Chr07 Coordinates: 2886274-2888686 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1198 bp · LXL04_031234|LXL04_031234|OH1004|cDNA

ATGTCATTTCGAAGCATAGTTCGCGATATAAGAGATGGCATTGGGAACTTATCTAGACGGGGATTTGAAAGAAGTAAATCACACAGTTTTGTTCATGAATTGGATAACCACTTGGATGTTGTAACCAATAGCGGTTGGAAGGGTCTCCCTCCCGAATTGCTTCGTGATGTGATTAAGAGATTGGAAGCAAGCGAAAGTACATGGCCTTCTCGCAAGCATGTGGTTGCATGTGCCTCAGTCTGTAGATCTTGGAGGGAAAT...

CDS

Download CDS FASTA

1185 bp · LXL04_031234|LXL04_031234|OH1004|CDS

ATGTCATTTCGAAGCATAGTTCGCGATATAAGAGATGGCATTGGGAACTTATCTAGACGGGGATTTGAAAGAAGTAAATCACACAGTTTTGTTCATGAATTGGATAACCACTTGGATGTTGTAACCAATAGCGGTTGGAAGGGTCTCCCTCCCGAATTGCTTCGTGATGTGATTAAGAGATTGGAAGCAAGCGAAAGTACATGGCCTTCTCGCAAGCATGTGGTTGCATGTGCCTCAGTCTGTAGATCTTGGAGGGAAAT...

Protein

Download Protein FASTA

394 aa · LXL04_031234|LXL04_031234|OH1004|PROTEIN

MSFRSIVRDIRDGIGNLSRRGFERSKSHSFVHELDNHLDVVTNSGWKGLPPELLRDVIKRLEASESTWPSRKHVVACASVCRSWREMCKEIVSSLEDSGKLTFPLSLKQPGPRDTTIQCFIKRDTSNSTYYLYLCLSSALVVENGKFLLSAKRSRKSTCTEYVISLDADNISRSNHGYIGKVRSNFLGTKFIIYDSQPPHNTANVVPPGRLGSSRRFSRRVSPKVPSGSFNIAQIAYELNVLGTRGPRRMNCIMHSIPMS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_031234`
TK1151 ID	TkA08G096080
OH-1004 ID	LXL04_031234
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.500
Protein coverage (%)	TK1151 94.472 / OH-1004 95.431 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_031234

Location Chr07:2886274-2888686 (-)

Description Similar to TULP14: Tubby-like F-box protein 14

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g76900`	Tubby-like F-box protein 1.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os12g0163400`	Tubby-like F-box protein 14.	No verified direct reference in this release
`Os05g0437900`	Tubby-like F-box protein 8.	No verified direct reference in this release
`Os11g0163600`	Tubby-like F-box protein 13.	No verified direct reference in this release
`Os04g0687900`	Tubby-like F-box protein 7.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031234 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

KEGG gene cross-reference

ath:AT1G76900

dosa:Os04g0687900

dosa:Os05g0437900

dosa:Os11g0163600

dosa:Os12g0163400

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.467

Rank 1 · LXL04_031234 · OH-1004

Nucleus0.375

Rank 2 · LXL04_031234 · OH-1004

Cell membrane0.315

Rank 3 · LXL04_031234 · OH-1004

Endoplasmic reticulum0.056

Rank 4 · LXL04_031234 · OH-1004

Lysosome / Vacuole0.041

Rank 5 · LXL04_031234 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12937.13F-box-like46-89 aa

PF01167.25Tub107-362 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_031234	`PF12937.13`	F-box-like	46	89	2.2e-06	28.0
LXL04_031234	`PF01167.25`	Tub	107	362	2.1e-77	261.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9ZP59`	Arabidopsis thaliana	Tubby-like F-box protein 1	64.083%	Swiss-Prot	strong database homology
`Q2QXB2`	Oryza sativa subsp. japonica	Tubby-like F-box protein 14	65.296%	Swiss-Prot	strong database homology
`Q75HX5`	Oryza sativa subsp. japonica	Tubby-like F-box protein 8	66.062%	Swiss-Prot	strong database homology
`Q53PP5`	Oryza sativa subsp. japonica	Tubby-like F-box protein 13	62.240%	Swiss-Prot	strong database homology
`Q7XSV4`	Oryza sativa subsp. japonica	Tubby-like F-box protein 7	62.916%	Swiss-Prot	strong database homology

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