LXL04_030969 | RubberDandelionOmics

Gene overview

LXL04_030969

Reference: OH-1004 Chr: Chr06 Coordinates: 125979663-125982206 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1266 bp · LXL04_030969|LXL04_030969|OH1004|cDNA

ATGGATCTACTCCTCAATGCTTACTCCACTAATACAGACGAAGATGAAGAAAATGAAACACATCCACCTCCTCCTTTCAAGCGAGCTAAACGAGAATTCACACATATATCCAACCATATTTCCACAGAATCTTCAATTGCAGGAAGATACATATCAAAACGTGAACGTGCACTAATGGCTTCAGCTCCTCAATCTTCCAATCCAGTTCCCCCATCTTCCTCACCCTCTTCCCCTGTTCAAGGAAGCATTTCGGATTCACA...

CDS

Download CDS FASTA

1266 bp · LXL04_030969|LXL04_030969|OH1004|CDS

ATGGATCTACTCCTCAATGCTTACTCCACTAATACAGACGAAGATGAAGAAAATGAAACACATCCACCTCCTCCTTTCAAGCGAGCTAAACGAGAATTCACACATATATCCAACCATATTTCCACAGAATCTTCAATTGCAGGAAGATACATATCAAAACGTGAACGTGCACTAATGGCTTCAGCTCCTCAATCTTCCAATCCAGTTCCCCCATCTTCCTCACCCTCTTCCCCTGTTCAAGGAAGCATTTCGGATTCACA...

Protein

Download Protein FASTA

421 aa · LXL04_030969|LXL04_030969|OH1004|PROTEIN

MDLLLNAYSTNTDEDEENETHPPPPFKRAKREFTHISNHISTESSIAGRYISKRERALMASAPQSSNPVPPSSSPSSPVQGSISDSHIRKDILSLLKNQTNSSYTSERNTTALIGHTKAVNALQWSKTHPHLLASCGMDSSIHIWNVWNTEQKKARVLNIHTAAVKDIKWSDSNQSLSLLSCGYDSTSRLIDVEKGVQIRVFNEDQVVGAVRFHPNNSNLFLSGGSKGVIRLWDIRSGNAVNQYVRGLGPILDLEFMNDT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_030969`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_030969`
Location	Chr06:125979663-125982206 (-)
Description	Similar to WDR25: WD repeat-containing protein 25
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_030969` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0000398 mRNA splicing, via spliceosome Biological Process GO:0045292 mRNA cis splicing, via spliceosome Biological Process GO:0000974 Prp19 complex Cellular Component GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005681 spliceosomal complex Cellular Component GO:0016607 nuclear speck Cellular Component GO:0071006 U2-type catalytic step 1 spliceosome Cellular Component GO:0071007 U2-type catalytic step 2 spliceosome Cellular Component GO:0071013 catalytic step 2 spliceosome Cellular Component GO:0071014 post-mRNA release spliceosomal complex Cellular Component GO:0071020 post-spliceosomal complex Cellular Component
KEGG gene cross-reference	hsa:51362 hsa:79446 mmu:212198 mmu:71713 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.830

Rank 1 · LXL04_030969 · OH-1004

Cytoplasm0.268

Rank 2 · LXL04_030969 · OH-1004

Lysosome / Vacuole0.028

Rank 3 · LXL04_030969 · OH-1004

Cell membrane0.021

Rank 4 · LXL04_030969 · OH-1004

Mitochondrion0.021

Rank 5 · LXL04_030969 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23775.2Beta-prop_RIG_2nd94-155 aa

PF30151.1PAC1198-152 aa

PF24105.2Beta-prop_CAF1B_HIR1103-244 aa

PF25173.2Beta-prop_WDR3_1st105-176 aa

PF25047.1Beta-prop_TEP1_2nd105-206 aa

PF24814.2WD40_Prp19106-259 aa

PF25174.2Beta-prop_THOC3107-171 aa

PF24807.2WD40_CDC20-Fz109-151 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_030969	`PF23775.2`	Beta-prop_RIG_2nd	94	155	7.1e-19	69.0
LXL04_030969	`PF30151.1`	PAC11	98	152	2.7e-11	43.7
LXL04_030969	`PF24105.2`	Beta-prop_CAF1B_HIR1	103	244	2.5e-14	53.7
LXL04_030969	`PF25173.2`	Beta-prop_WDR3_1st	105	176	1e-25	91.3
LXL04_030969	`PF25047.1`	Beta-prop_TEP1_2nd	105	206	5.6e-11	42.8
LXL04_030969	`PF24814.2`	WD40_Prp19	106	259	1.1e-26	94.3
LXL04_030969	`PF25174.2`	Beta-prop_THOC3	107	171	1.4e-39	136.4
LXL04_030969	`PF24807.2`	WD40_CDC20-Fz	109	151	9.6e-23	81.6
LXL04_030969	`PF23381.2`	Beta-prop_IFT122_1st	110	291	3.3e-25	89.7
LXL04_030969	`PF23609.2`	Beta-prop_EIPR1	110	190	4.8e-14	53.2
LXL04_030969	`PF24797.2`	Beta-prop_WDR35_TULP_N	110	242	4.9e-06	26.6
LXL04_030969	`PF00400.39`	WD40	112	146	2.7e-25	88.4
LXL04_030969	`PF24805.2`	EIF3I	112	221	7.7e-14	52.3
LXL04_030969	`PF25175.2`	Beta-prop_WDR5	113	411	9.7e-37	127.5
LXL04_030969	`PF24782.3`	WD40_MABP1-WDR62_2nd	113	197	4e-14	53.0
LXL04_030969	`PF25174.2`	Beta-prop_THOC3	116	404	1.4e-39	136.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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