LXL04_030835 | RubberDandelionOmics

Gene overview

LXL04_030835

Reference: OH-1004 Chr: Chr06 Coordinates: 123728476-123732641 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1125 bp · LXL04_030835|LXL04_030835|OH1004|cDNA

ATGGCCACCAGATACTGGATAGTTTCTCTTCCCGTTAAGAGCTCTGCTTCTTCTCTATGGAGCCGCTTACAAGAATCCATCTCCAAAAACTCATTCGACACTCCTCTCTACAGGTTTAATATCCCGAATCTTCGTGTTGGCACTCTGGATTCGCTTTTAGCCCTCAGCGATGACTTGCTCAAGGCGAATACGTTCATCGAAGCATGCTCTCACAAGATACGGCGTCAGATTGAAGATTTGGAAAAGTTATCGGGAATTCT...

CDS

Download CDS FASTA

1125 bp · LXL04_030835|LXL04_030835|OH1004|CDS

ATGGCCACCAGATACTGGATAGTTTCTCTTCCCGTTAAGAGCTCTGCTTCTTCTCTATGGAGCCGCTTACAAGAATCCATCTCCAAAAACTCATTCGACACTCCTCTCTACAGGTTTAATATCCCGAATCTTCGTGTTGGCACTCTGGATTCGCTTTTAGCCCTCAGCGATGACTTGCTCAAGGCGAATACGTTCATCGAAGCATGCTCTCACAAGATACGGCGTCAGATTGAAGATTTGGAAAAGTTATCGGGAATTCT...

Protein

Download Protein FASTA

374 aa · LXL04_030835|LXL04_030835|OH1004|PROTEIN

MATRYWIVSLPVKSSASSLWSRLQESISKNSFDTPLYRFNIPNLRVGTLDSLLALSDDLLKANTFIEACSHKIRRQIEDLEKLSGILSSSLTVDGVPVDSYLTKFVWDEAKYPTMSPLKEIVDGIHVHVAKIDDDLKIRIAEYNNVRSQLNAINRKQTGSLAVRDLSNLVKPEDLVTSEHLITLIAVVPKYSQKDWLSSYETLTTYVVPRSSKNLHEDNEYAIYTVTLFIRDADNFRTKAREKGFQVRDFEYNSETQESR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_030835`
TK1151 ID	TkA07G435200
OH-1004 ID	LXL04_030835
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_030835

Location Chr06:123728476-123732641 (+)

Description Similar to VHA-C: V-type proton ATPase subunit C

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g12840`	Subunit of the peripheral V1 complex of vacuolar ATPase.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_030835 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009826 unidimensional cell growth Biological Process

GO:0000221 vacuolar proton-transporting V-type ATPase, V1 domain Cellular Component

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005765 lysosomal membrane Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005774 vacuolar membrane Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0030665 clathrin-coated vesicle membrane Cellular Component

GO:0046961 proton-transporting ATPase activity, rotational mechanism Molecular Function

KEGG gene cross-reference

ath:AT1G12840

mcf:101866706

pon:100171885

xla:495092

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.586

Rank 1 · LXL04_030835 · OH-1004

Nucleus0.251

Rank 2 · LXL04_030835 · OH-1004

Golgi apparatus0.171

Rank 3 · LXL04_030835 · OH-1004

Lysosome / Vacuole0.156

Rank 4 · LXL04_030835 · OH-1004

Endoplasmic reticulum0.064

Rank 5 · LXL04_030835 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03223.21V-ATPase_C5-367 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_030835	`PF03223.21`	V-ATPase_C	5	367	2.6e-127	426.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SDS7`	Arabidopsis thaliana	V-type proton ATPase subunit C	78.342%	Swiss-Prot	strong database homology

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