LXL04_030799 | RubberDandelionOmics

Gene overview

LXL04_030799

Reference: OH-1004 Chr: Chr06 Coordinates: 122993955-122996308 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1353 bp · LXL04_030799|LXL04_030799|OH1004|cDNA

ATGCCACGAACAACTACGGTAGAATCTGCTGGCTGTCCTCCACTTCGCGCCCTAACTTTCGACGTTCTTGGTCTCATTAAAGTTACGGAAGCTCGAAGTAAGCAAGGAGGAGTTCCTAAGGTTGTCGAGAGATGGGGGGAACCAGACTCCTCTCGATGCGTGCTTGCTGTTTCTACTAATGACCGTAAAATCGACCCTCTGTTAGCAGTTGCAAGGAAAAGTGGTGTGGTTGAGTTGCTTAGCTCCATTAATGGTGATAT...

CDS

Download CDS FASTA

1353 bp · LXL04_030799|LXL04_030799|OH1004|CDS

ATGCCACGAACAACTACGGTAGAATCTGCTGGCTGTCCTCCACTTCGCGCCCTAACTTTCGACGTTCTTGGTCTCATTAAAGTTACGGAAGCTCGAAGTAAGCAAGGAGGAGTTCCTAAGGTTGTCGAGAGATGGGGGGAACCAGACTCCTCTCGATGCGTGCTTGCTGTTTCTACTAATGACCGTAAAATCGACCCTCTGTTAGCAGTTGCAAGGAAAAGTGGTGTGGTTGAGTTGCTTAGCTCCATTAATGGTGATAT...

Protein

Download Protein FASTA

450 aa · LXL04_030799|LXL04_030799|OH1004|PROTEIN

MPRTTTVESAGCPPLRALTFDVLGLIKVTEARSKQGGVPKVVERWGEPDSSRCVLAVSTNDRKIDPLLAVARKSGVVELLSSINGDIRVSLPSDNQSDVQSQEDNIVGLHLFKKQTSQSSSRSCTLLTCTSKGFSTLRSFSIPNSQSDSISDDTPTTWNVSAAGNVLCCKVDENENYALYGGKGVEVNIWDLTTHTKIWTAKSPKKNSLGIFTPTWFTSATFLHKDDHRKFVAGTNSHQVRLYDMSAQRRPVVSFDFRET...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_030799`
TK1151 ID	TkA07G432170
OH-1004 ID	LXL04_030799
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`LXL04_030799`
Location	Chr06:122993955-122996308 (+)
Description	Similar to WDR74: WD repeat-containing protein 74
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_030799` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0006364 rRNA processing Biological Process GO:0016070 RNA metabolic process Biological Process GO:0042273 ribosomal large subunit biogenesis Biological Process GO:0000176 nuclear exosome (RNase complex) Cellular Component GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005730 nucleolus Cellular Component GO:0030687 preribosome, large subunit precursor Cellular Component
KEGG gene cross-reference	bta:505875 ddi:DDB_G0290555 dha:DEHA2C10186g hsa:54663 mmu:107071 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.942

Rank 1 · LXL04_030799 · OH-1004

Cytoplasm0.178

Rank 2 · LXL04_030799 · OH-1004

Mitochondrion0.016

Rank 3 · LXL04_030799 · OH-1004

Cell membrane0.013

Rank 4 · LXL04_030799 · OH-1004

Endoplasmic reticulum0.007

Rank 5 · LXL04_030799 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23381.2Beta-prop_IFT122_1st154-330 aa

PF24814.2WD40_Prp19161-345 aa

PF23098.2Beta-prop_NOL10_N163-267 aa

PF25175.2Beta-prop_WDR5165-343 aa

PF25173.2Beta-prop_WDR3_1st186-341 aa

PF25171.2Beta-prop_WDR36-Utp21_1st187-340 aa

PF24807.2WD40_CDC20-Fz217-346 aa

PF24796.2WDR55227-332 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_030799	`PF23381.2`	Beta-prop_IFT122_1st	154	330	1.1e-12	48.6
LXL04_030799	`PF24814.2`	WD40_Prp19	161	345	1.8e-11	44.3
LXL04_030799	`PF23098.2`	Beta-prop_NOL10_N	163	267	5.4e-08	33.1
LXL04_030799	`PF25175.2`	Beta-prop_WDR5	165	343	4.7e-09	36.7
LXL04_030799	`PF25173.2`	Beta-prop_WDR3_1st	186	341	2.1e-11	44.6
LXL04_030799	`PF25171.2`	Beta-prop_WDR36-Utp21_1st	187	340	8.1e-08	32.7
LXL04_030799	`PF24807.2`	WD40_CDC20-Fz	217	346	1.4e-11	45.0
LXL04_030799	`PF24796.2`	WDR55	227	332	4.3e-06	26.7
LXL04_030799	`PF24817.2`	WD40_WDHD1_1st	228	340	3e-09	37.2
LXL04_030799	`PF25172.2`	Beta-prop_WDR3_2nd	230	335	1.3e-06	28.6
LXL04_030799	`PF25168.2`	Beta-prop_WDR36-Utp21_2nd	260	352	3.7e-06	27.2
LXL04_030799	`PF23381.2`	Beta-prop_IFT122_1st	264	337	1.1e-12	48.6
LXL04_030799	`PF00400.39`	WD40	291	330	1.6e-07	32.3
LXL04_030799	`PF23414.2`	Beta-prop_EML_2	307	353	2.3e-11	44.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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