Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1446 bp · LXL04_030768|LXL04_030768|OH1004|cDNA
ATGTTGAAATCAACCATTGCCCCCATGCTATCTACCCTCCACCCGCAAAAGCTATTCCCCATCAAGCTCGCGTCTTTTTCTACTGCATTACCACGGGCACGAAGTCCGCCAACTGTTCGACAAAATGCCTCAACCAACACTCCAATTCTCGAGACCCCGTCCTACAAACTCCCTCCAGCTTCAGCCTACGTCCACCTCCCTTTCTGCCGCAAACGCTGCCATTATTGCGACTTTCCAATACTAGCCCTGGGTTTATCTTC...
1446 bp · LXL04_030768|LXL04_030768|OH1004|CDS
ATGTTGAAATCAACCATTGCCCCCATGCTATCTACCCTCCACCCGCAAAAGCTATTCCCCATCAAGCTCGCGTCTTTTTCTACTGCATTACCACGGGCACGAAGTCCGCCAACTGTTCGACAAAATGCCTCAACCAACACTCCAATTCTCGAGACCCCGTCCTACAAACTCCCTCCAGCTTCAGCCTACGTCCACCTCCCTTTCTGCCGCAAACGCTGCCATTATTGCGACTTTCCAATACTAGCCCTGGGTTTATCTTC...
Protein
Download Protein FASTA481 aa · LXL04_030768|LXL04_030768|OH1004|PROTEIN
MLKSTIAPMLSTLHPQKLFPIKLASFSTALPRARSPPTVRQNASTNTPILETPSYKLPPASAYVHLPFCRKRCHYCDFPILALGLSSTETADDDPRISNYIHLLIREIEATETKFTQHPPLETVFFGGGTPSLVPPRLVAKVLDTLRSKFGLCLDAEISMEMDPGTFDAKKLTELMELGVNRVSLGVQAFQEELLKACGRAHGIDEVHEAIDIIGSCGVRNWSMDLISSLPHQTQEMWEQSLNLTIKANPNHVSIYDLQV...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_030768 |
|---|---|
| TK1151 ID | TkA07G429610 |
| OH-1004 ID | LXL04_030768 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_030768 |
|---|---|
| Location | Chr06:122357886-122359416 (-) |
| Description | Similar to hemW: Heme chaperone HemW (Synechocystis sp. (strain PCC 6803 / Kazusa) |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006779 porphyrin-containing compound biosynthetic process Biological Process GO:0005737 cytoplasm Cellular Component GO:0005886 plasma membrane Cellular Component GO:0004109 coproporphyrinogen oxidase activity Molecular Function GO:0020037 heme binding Molecular Function GO:0042803 protein homodimerization activity Molecular Function GO:0046872 metal ion binding Molecular Function GO:0051537 2 iron, 2 sulfur cluster binding Molecular Function GO:0051539 4 iron, 4 sulfur cluster binding Molecular Function |
| KEGG gene cross-reference | bsu:BSU25500 ecj:JW2922 eco:b2955 ecoc:C3026_16170 hin:HI_0463 lla:L0193 syn:sll1917 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF04055.28Radical_SAM63-244 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_030768 | PF04055.28 | Radical_SAM | 63 | 244 | 8e-25 | 88.6 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.