Gene Card
Gene overview
cDNA / CDS / Protein Sequences
618 bp · LXL04_030025|LXL04_030025|OH1004|cDNA
ATGTCTATGCGTAGAAGAACTTTGCTCAAGGTCATCGTCCTTGGCGACAGTGGAGTTGGCAAGACGTCATTGATGAATCAATACGTACATAACAAGTTCAGTCAGCAATATAAAGCCACAATCGGAGCTGATTTTGTCACCAAAGAATTGCAAATAGATGACAGGCTTGTCACTTTACAGATTTGGGACACTGCTGGACAGGAGAGGTTTCAGAGTCTTGGTGTTGCATTTTATCGTGGAGCAGATTGTTGTGTTCTTGT...
618 bp · LXL04_030025|LXL04_030025|OH1004|CDS
ATGTCTATGCGTAGAAGAACTTTGCTCAAGGTCATCGTCCTTGGCGACAGTGGAGTTGGCAAGACGTCATTGATGAATCAATACGTACATAACAAGTTCAGTCAGCAATATAAAGCCACAATCGGAGCTGATTTTGTCACCAAAGAATTGCAAATAGATGACAGGCTTGTCACTTTACAGATTTGGGACACTGCTGGACAGGAGAGGTTTCAGAGTCTTGGTGTTGCATTTTATCGTGGAGCAGATTGTTGTGTTCTTGT...
Protein
Download Protein FASTA205 aa · LXL04_030025|LXL04_030025|OH1004|PROTEIN
MSMRRRTLLKVIVLGDSGVGKTSLMNQYVHNKFSQQYKATIGADFVTKELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMRSFDTLDNWHEEFLKQANPPDPSSFPFILLGNKIDIDGGNSRVVSEKKAKEWCASKGNIPYFETSAKEDFNVDAAFLSIAKTAMANEHEQDIYFQGVPEAVPETEQRGGCAC
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_030025 |
|---|---|
| TK1151 ID | TkA07G371230 |
| OH-1004 ID | LXL04_030025 |
| Relationship / confidence | Non Reciprocal Best Hit / Complex relationship |
| Protein identity (%) | 91.600 |
| Protein coverage (%) | TK1151 92.908 / OH-1004 63.415Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_030025 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr06:105984228-105985746 (-) | |||||||||
| Description | Similar to Ras-related protein Rab7 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0010089 xylem development Biological Process GO:0010508 positive regulation of autophagy Biological Process GO:0010623 programmed cell death involved in cell development Biological Process GO:0015031 protein transport Biological Process GO:1905177 tracheary element differentiation Biological Process GO:0000325 plant-type vacuole Cellular Component GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005774 vacuolar membrane Cellular Component GO:0005794 Golgi apparatus Cellular Component GO:0005829 cytosol Cellular Component GO:0005886 plasma membrane Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT1G22740 ath:AT4G09720 ghi:107897195 ghi:107913905 gmx:100785104 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00025.28Arf8-136 aaPF00071.29Ras10-176 aaPF08477.20Roc10-128 aaPF01926.30MMR_HSR110-112 aaPF00009.34GTP_EFTU49-168 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_030025 | PF00025.28 | Arf | 8 | 136 | 1.4e-11 | 44.9 |
| LXL04_030025 | PF00071.29 | Ras | 10 | 176 | 3.8e-56 | 189.9 |
| LXL04_030025 | PF08477.20 | Roc | 10 | 128 | 3.6e-34 | 118.3 |
| LXL04_030025 | PF01926.30 | MMR_HSR1 | 10 | 112 | 1.9e-07 | 31.9 |
| LXL04_030025 | PF00009.34 | GTP_EFTU | 49 | 168 | 7.9e-06 | 26.3 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.