LXL04_029930 | RubberDandelionOmics

Gene overview

LXL04_029930

Reference: OH-1004 Chr: Chr06 Coordinates: 103535416-103539764 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

4191 bp · LXL04_029930|LXL04_029930|OH1004|cDNA

ATGGCTGCGTCCTTGGAGATTACAGCCTCCGAATTCTTACAAGGTTCAAGGACTCGTAACTTCTTCTTGCCAAAACCTTTACCAAAGAGCAGAAGCTCCCATCTGCTCTTCGGTTTATCTCAACACAAAAGAAACAATCTGGTGAGAATATGCAGccaaggtgttcgacgaaatgcctccAAGAAAGTCAAGGCCGTGGTATCGGTAGACACACAGGATCTGGGCAGTGTCgacaaaaccgaaaccgaaaaaGTCATTCA...

CDS

Download CDS FASTA

4191 bp · LXL04_029930|LXL04_029930|OH1004|CDS

ATGGCTGCGTCCTTGGAGATTACAGCCTCCGAATTCTTACAAGGTTCAAGGACTCGTAACTTCTTCTTGCCAAAACCTTTACCAAAGAGCAGAAGCTCCCATCTGCTCTTCGGTTTATCTCAACACAAAAGAAACAATCTGGTGAGAATATGCAGCCAAGGTGTTCGACGAAATGCCTCCAAGAAAGTCAAGGCCGTGGTATCGGTAGACACACAGGATCTGGGCAGTGTCGACAAAACCGAAACCGAAAAAGTCATTCA...

Protein

Download Protein FASTA

1396 aa · LXL04_029930|LXL04_029930|OH1004|PROTEIN

MAASLEITASEFLQGSRTRNFFLPKPLPKSRSSHLLFGLSQHKRNNLVRICSQGVRRNASKKVKAVVSVDTQDLGSVDKTETEKVIHFYRTPLIQETANEELLKSIQTKISNQIVGLKTEQCFNIGIEGSLSSEKLSVLKWLLRETYEPNNLGEESYFPKEKVNTVVVEVGPRLSFTTAWSANAVSICQACSLSEVTRLERSRRYILFLESGTTLPDTQIHEFAAMVHDRMTECIYPQKLVSFKTSLVPEQVYSIPVMEK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_029930`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_029930

Location Chr06:103535416-103539764 (+)

Description Similar to At1g74260: Probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g74260`	Essential to the male gametophyte development.	pur4 mutations are lethal to the male, but not the female, gametophyte and affect sporophyte development in Arabidopsis.2008 · DOI: 10.1104/pp.108.120014

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_029930 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006164 purine nucleotide biosynthetic process Biological Process

GO:0006177 GMP biosynthetic process Biological Process

GO:0006189 'de novo' IMP biosynthetic process Biological Process

GO:0006541 glutamine metabolic process Biological Process

GO:0009113 purine nucleobase biosynthetic process Biological Process

GO:0009168 purine ribonucleoside monophosphate biosynthetic process Biological Process

GO:0009410 response to xenobiotic stimulus Biological Process

GO:0009555 pollen development Biological Process

GO:0044208 'de novo' AMP biosynthetic process Biological Process

GO:0055046 microgametogenesis Biological Process

GO:0097294 'de novo' XMP biosynthetic process Biological Process

GO:0005737 cytoplasm Cellular Component

KEGG gene cross-reference

ath:AT1G74260

ddi:DDB_G0288145

dme:Dmel_CG9127

hsa:5198

mmu:237823

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.850

Rank 1 · LXL04_029930 · OH-1004

Mitochondrion0.170

Rank 2 · LXL04_029930 · OH-1004

Cytoplasm0.069

Rank 3 · LXL04_029930 · OH-1004

Nucleus0.031

Rank 4 · LXL04_029930 · OH-1004

Peroxisome0.028

Rank 5 · LXL04_029930 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF18076.7FGAR-AT_N122-238 aa

PF18072.7FGAR-AT_linker265-314 aa

PF02769.28AIRS_C528-682 aa

PF22689.2FGAR-AT_PurM_N-like746-899 aa

PF02769.28AIRS_C925-1060 aa

PF13507.13GATase_51128-1392 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_029930	`PF18076.7`	FGAR-AT_N	122	238	1.6e-18	67.5
LXL04_029930	`PF18072.7`	FGAR-AT_linker	265	314	4.7e-11	43.7
LXL04_029930	`PF02769.28`	AIRS_C	528	682	1.4e-49	168.9
LXL04_029930	`PF22689.2`	FGAR-AT_PurM_N-like	746	899	4.6e-53	180.0
LXL04_029930	`PF02769.28`	AIRS_C	925	1060	1.4e-49	168.9
LXL04_029930	`PF13507.13`	GATase_5	1128	1392	2.1e-106	355.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9M8D3`	Arabidopsis thaliana	Probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial	76.312%	Swiss-Prot	strong database homology

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