LXL04_029715 | RubberDandelionOmics

Gene overview

LXL04_029715

Reference: OH-1004 Chr: Chr06 Coordinates: 98161035-98170586 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1545 bp · LXL04_029715|LXL04_029715|OH1004|cDNA

ATGCTGCCTTTAGCCAATTCCATGGTGATAATACCATTTGCTGCCGAGTTGGACAATGATGTCCTAAAAGTCTCCCAAGAATCCGaggtatacaataaccATCAAACACTTGGAATAGAGCACATCAAGTGTTTGGAATCAAACAACAAAGAGAAATATGGAAGAACACCAAAAACAGGGGCTGAATTTCAGCCTTACAGAACCTGCGTTTCCCGAGCTTCTGGAGCAGATATGAACGATCCAACCGGACAAAAGGAAGG...

CDS

Download CDS FASTA

1545 bp · LXL04_029715|LXL04_029715|OH1004|CDS

ATGCTGCCTTTAGCCAATTCCATGGTGATAATACCATTTGCTGCCGAGTTGGACAATGATGTCCTAAAAGTCTCCCAAGAATCCGAGGTATACAATAACCATCAAACACTTGGAATAGAGCACATCAAGTGTTTGGAATCAAACAACAAAGAGAAATATGGAAGAACACCAAAAACAGGGGCTGAATTTCAGCCTTACAGAACCTGCGTTTCCCGAGCTTCTGGAGCAGATATGAACGATCCAACCGGACAAAAGGAAGG...

Protein

Download Protein FASTA

514 aa · LXL04_029715|LXL04_029715|OH1004|PROTEIN

MLPLANSMVIIPFAAELDNDVLKVSQESEVYNNHQTLGIEHIKCLESNNKEKYGRTPKTGAEFQPYRTCVSRASGADMNDPTGQKEGLDVMRMLSENEGKRTVGSPGNNETLQLRKLASNYKFTTSTFDFSNMDKLGFFSFLLILLNIIQYATCATTNPTALDFVKTSCKTTRNQALRVNSLSTFAGAIKGNDQQLVKAAIAVSLNNAKSAAAFVSKLSGTSKVKSREYQALKDCVNSMASCVASLTQSIQTLGQMGKFR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_029715`
TK1151 ID	TkAUNG064580
OH-1004 ID	LXL04_029715
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 33.852 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_029715

Location Chr06:98161035-98170586 (+)

Description Similar to PMEI9: Pectinesterase inhibitor 9

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g62770`	Pectin methylesterase (PME) inhibitor that probably targets root-expressed PME and PME3 in a moderate pH-dependent manner, mainly in slightly acidic conditions (pH 6.3 and 5.0) and to some extent at pH 7.5.	Combined Experimental and Computational Approaches Reveal Distinct pH Dependence of Pectin Methylesterase Inhibitors.2017 · DOI: 10.1104/pp.16.01790
`At3g47380`	Pectin methylesterase (PME) inhibitor involved in the maintenance of cell wall integrity in response to necrotrophic pathogens.	No verified direct reference in this release
`At1g62760`	Pectin methylesterase (PME) inhibitor involved in the maintenance of cell wall integrity in response to necrotrophic pathogens.	No verified direct reference in this release
`At4g25260`	Pectin methylesterase (PME) inhibitor that can target PME3 in a pH-dependent manner, mainly in slightly acidic conditions (pH 6.0 and 5.0) but not at pH 7.0.	Tuning of Pectin Methylesterification: PECTIN METHYLESTERASE INHIBITOR 7 MODULATES THE PROCESSIVE ACTIVITY OF CO-EXPRESSED PECTIN METHYLESTERASE 3 IN A pH-DEPENDENT MANNER.2015 · DOI: 10.1074/jbc.m115.639534 Structural and dynamical characterization of the pH-dependence of the pectin methylesterase-pectin methylesterase inhibitor complex.2017 · DOI: 10.1074/jbc.ra117.000197

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_029715 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009827 plant-type cell wall modification Biological Process

GO:0071669 plant-type cell wall organization or biogenesis Biological Process

GO:0005576 extracellular region Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0048046 apoplast Cellular Component

GO:0004857 enzyme inhibitor activity Molecular Function

GO:0046910 pectinesterase inhibitor activity Molecular Function

KEGG gene cross-reference

ath:AT1G62770

ath:AT3G47380

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.469

Rank 1 · LXL04_029715 · OH-1004

Endoplasmic reticulum0.165

Rank 2 · LXL04_029715 · OH-1004

Lysosome / Vacuole0.146

Rank 3 · LXL04_029715 · OH-1004

Cytoplasm0.142

Rank 4 · LXL04_029715 · OH-1004

Cell membrane0.117

Rank 5 · LXL04_029715 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04043.21PMEI163-319 aa

PF04043.21PMEI343-499 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_029715	`PF04043.21`	PMEI	163	319	1.1e-66	224.5
LXL04_029715	`PF04043.21`	PMEI	343	499	1.1e-66	224.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SI72`	Arabidopsis thaliana	Pectinesterase inhibitor 9	45.213%	Swiss-Prot	weak database homology
`Q9STY5`	Arabidopsis thaliana	Pectinesterase inhibitor 11	42.286%	Swiss-Prot	weak database homology
`Q9SI74`	Arabidopsis thaliana	Pectinesterase inhibitor 10	42.683%	Swiss-Prot	weak database homology
`Q9SB37`	Arabidopsis thaliana	Pectinesterase inhibitor 7	36.527%	Swiss-Prot	weak database homology

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