LXL04_029705 | RubberDandelionOmics

Gene overview

LXL04_029705

Reference: OH-1004 Chr: Chr06 Coordinates: 97760737-97764963 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2433 bp · LXL04_029705|LXL04_029705|OH1004|cDNA

ATGCATTTCCTGGCCAATATACAGACAGTAAATATACAATATCTTTCGGTCTTACTTGAAGCTTTAGCTCCCGGTTgtattaataaaattaatattatcgaaaattcacaactttttagCAAATTTCTTAATGAAATGAGTAATCAACATCCAATGAATGAAGTGTTCATCACCGTCAACTCTTGTCCACTTTCAGTCACCAGTATATGTAGTCTTCCTCTCCATCATCCTGTGTgcgcacacacacacacacttcCAGT...

CDS

Download CDS FASTA

2433 bp · LXL04_029705|LXL04_029705|OH1004|CDS

ATGCATTTCCTGGCCAATATACAGACAGTAAATATACAATATCTTTCGGTCTTACTTGAAGCTTTAGCTCCCGGTTGTATTAATAAAATTAATATTATCGAAAATTCACAACTTTTTAGCAAATTTCTTAATGAAATGAGTAATCAACATCCAATGAATGAAGTGTTCATCACCGTCAACTCTTGTCCACTTTCAGTCACCAGTATATGTAGTCTTCCTCTCCATCATCCTGTGTGCGCACACACACACACACTTCCAGT...

Protein

Download Protein FASTA

810 aa · LXL04_029705|LXL04_029705|OH1004|PROTEIN

MHFLANIQTVNIQYLSVLLEALAPGCINKINIIENSQLFSKFLNEMSNQHPMNEVFITVNSCPLSVTSICSLPLHHPVCAHTHTLPVSHNDGGKKSHPIFLSHSNHRPPPPPLFHQHSLYPATHQQGGGVTRLLHRLTVSNIKQPPKPTTRLHTADVPHHPLDPLTLNELNKVRSILLSNALFLNSNTHAFHSVVLEEPDKSVVLTWTHGQPLPPRKASVIARVNGQAHVFSVDLGSGEATIVDVGEHSGYPTMTIEDMT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_029705`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_029705

Location Chr06:97760737-97764963 (+)

Description Similar to At1g62810: Primary amine oxidase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g62810`	Copper amine oxidase that can use putrescine and spermidine as substrates.	No verified direct reference in this release
`At3g43670`	Copper amine oxidase that can use putrescine and spermidine as substrates.	No verified direct reference in this release
`At1g31690`	Copper amine oxidase that can use putrescine and spermidine as substrates.	Copper amine oxidase 8 regulates arginine-dependent nitric oxide production in Arabidopsis thaliana.2017 · DOI: 10.1093/jxb/erx105
`At1g31710`	Copper amine oxidase that can use putrescine and spermidine as substrates.	Copper-containing amine oxidases contribute to terminal polyamine oxidation in peroxisomes and apoplast of Arabidopsis thaliana.2013 · DOI: 10.1186/1471-2229-13-109
`At1g31672`	Primary amine oxidase 2.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_029705 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0002237 response to molecule of bacterial origin Biological Process

GO:0006809 nitric oxide biosynthetic process Biological Process

GO:0009308 amine metabolic process Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009447 putrescine catabolic process Biological Process

GO:0009611 response to wounding Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009733 response to auxin Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009751 response to salicylic acid Biological Process

GO:0009753 response to jasmonic acid Biological Process

KEGG gene cross-reference

ath:AT1G31690

ath:AT1G31710

ath:AT1G62810

ath:AT3G43670

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.270

Rank 1 · LXL04_029705 · OH-1004

Lysosome / Vacuole0.191

Rank 2 · LXL04_029705 · OH-1004

Cytoplasm0.156

Rank 3 · LXL04_029705 · OH-1004

Golgi apparatus0.150

Rank 4 · LXL04_029705 · OH-1004

Extracellular0.124

Rank 5 · LXL04_029705 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02727.22Cu_amine_oxidN2160-238 aa

PF02728.23Cu_amine_oxidN3258-360 aa

PF01179.28Cu_amine_oxid387-798 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_029705	`PF02727.22`	Cu_amine_oxidN2	160	238	1.7e-20	73.8
LXL04_029705	`PF02728.23`	Cu_amine_oxidN3	258	360	2.2e-27	96.0
LXL04_029705	`PF01179.28`	Cu_amine_oxid	387	798	9.6e-133	443.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8H1H9`	Arabidopsis thaliana	Amine oxidase [copper-containing] gamma 1	61.876%	Swiss-Prot	strong database homology
`Q9M2B9`	Arabidopsis thaliana	Amine oxidase [copper-containing] gamma 2	60.763%	Swiss-Prot	strong database homology
`F4IAX0`	Arabidopsis thaliana	Amine oxidase [copper-containing] alpha 2, peroxisomal	46.330%	Swiss-Prot	moderate database homology
`F4IAX1`	Arabidopsis thaliana	Amine oxidase [copper-containing] alpha 3, peroxisomal	45.046%	Swiss-Prot	moderate database homology
`P0DO00`	Arabidopsis thaliana	Primary amine oxidase 2	44.749%	Swiss-Prot	moderate database homology

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