LXL04_029580 | RubberDandelionOmics

Gene overview

LXL04_029580

Reference: OH-1004 Chr: Chr06 Coordinates: 94722351-94722905 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

555 bp · LXL04_029580|LXL04_029580|OH1004|cDNA

ATGGCACTAGTCGTTCATAAATACAGTCTTTTTGTACTCTTAACGTTCTTGATATTGCATTCTTTTTCCACTTTTGCTCACTCGAAACACACGAACGAAAAGAAACCATGCAAGAGATTTGTGCTGTACTACCACGACATCCTTTTCAATGGCACTAATGTCGCTAATGCCACATCAGCCACAACTGCAAACGGCACCATGCTTGGAAATTTTCAGCTTGGAAAGCTTGTGGTCTTCGATGATCCCATGACCAAAGATAA...

CDS

Download CDS FASTA

555 bp · LXL04_029580|LXL04_029580|OH1004|CDS

ATGGCACTAGTCGTTCATAAATACAGTCTTTTTGTACTCTTAACGTTCTTGATATTGCATTCTTTTTCCACTTTTGCTCACTCGAAACACACGAACGAAAAGAAACCATGCAAGAGATTTGTGCTGTACTACCACGACATCCTTTTCAATGGCACTAATGTCGCTAATGCCACATCAGCCACAACTGCAAACGGCACCATGCTTGGAAATTTTCAGCTTGGAAAGCTTGTGGTCTTCGATGATCCCATGACCAAAGATAA...

Protein

Download Protein FASTA

184 aa · LXL04_029580|LXL04_029580|OH1004|PROTEIN

MALVVHKYSLFVLLTFLILHSFSTFAHSKHTNEKKPCKRFVLYYHDILFNGTNVANATSATTANGTMLGNFQLGKLVVFDDPMTKDNNLLSTPVARAQGFYFYDMKTTYNAWFSYTLVFNSSEHKGTINIMGADIMDEETRDLSVVGGTGAFFMTRGICTLRTDAIEGVAYFRVEMDIKLYECY

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_029580`
TK1151 ID	TkA07G325940
OH-1004 ID	LXL04_029580
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 64.130 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_029580

Location Chr06:94722351-94722905 (+)

Description Similar to DIR5: Dirigent protein 5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g64160`	May participate in stereoselective coupling during biosynthesis of lignans and other specialized metabolites.	Opposite stereoselectivities of dirigent proteins in Arabidopsis and schizandra species.2012 · DOI: 10.1074/jbc.m112.387423
`At4g23690`	Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism.	Opposite stereoselectivities of dirigent proteins in Arabidopsis and schizandra species.2012 · DOI: 10.1074/jbc.m112.387423
`At4g11210`	Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism.	No verified direct reference in this release
`At4g11190`	Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism.	No verified direct reference in this release
`At4g11180`	Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism (By similarity).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_029580 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009699 phenylpropanoid biosynthetic process Biological Process

GO:0009807 lignan biosynthetic process Biological Process

GO:1901598 (-)-pinoresinol metabolic process Biological Process

GO:1901599 (-)-pinoresinol biosynthetic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0048046 apoplast Cellular Component

GO:0042349 guiding stereospecific synthesis activity Molecular Function

GO:0042802 identical protein binding Molecular Function

GO:0042803 protein homodimerization activity Molecular Function

KEGG gene cross-reference

ath:AT1G64160

ath:AT4G11180

ath:AT4G11190

ath:AT4G11210

ath:AT4G23690

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.516

Rank 1 · LXL04_029580 · OH-1004

Endoplasmic reticulum0.140

Rank 2 · LXL04_029580 · OH-1004

Cell membrane0.108

Rank 3 · LXL04_029580 · OH-1004

Lysosome / Vacuole0.094

Rank 4 · LXL04_029580 · OH-1004

Cytoplasm0.074

Rank 5 · LXL04_029580 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03018.20Dirigent37-180 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_029580	`PF03018.20`	Dirigent	37	180	1.3e-35	123.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SH66`	Arabidopsis thaliana	Dirigent protein 5	68.553%	Swiss-Prot	strong database homology
`Q9SUQ8`	Arabidopsis thaliana	Dirigent protein 6	69.231%	Swiss-Prot	strong database homology
`Q9T019`	Arabidopsis thaliana	Dirigent protein 14	54.348%	Swiss-Prot	strong database homology
`Q9T017`	Arabidopsis thaliana	Dirigent protein 13	52.717%	Swiss-Prot	strong database homology
`O82498`	Arabidopsis thaliana	Dirigent protein 12	53.039%	Swiss-Prot	strong database homology

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