LXL04_029526 | RubberDandelionOmics

Gene overview

LXL04_029526

Reference: OH-1004 Chr: Chr06 Coordinates: 93008698-93012878 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1866 bp · LXL04_029526|LXL04_029526|OH1004|cDNA

ATGGAAAACTTAGCGGGATTCTGTTCAATGGCAGCCACTCTGTTTCTGCTTATGGGAGTTCTACCTTTGGTTTTATCCAGAGGACATGACTATGGAGAAGCTCTAAGCAAAAGCATTCTGTTCTTCGAAGCTCAGAGATCCGGTTATCTTCCCGGTAATCAAAGAGTTAACTGGAGAGGAAACTCGGGCCTCCTCGATGGCAAAACCAATGGGGTGGATCTGGTGGGAGGGTATTATGATGCAGGGGATAACGTGAAGTT...

CDS

Download CDS FASTA

1866 bp · LXL04_029526|LXL04_029526|OH1004|CDS

ATGGAAAACTTAGCGGGATTCTGTTCAATGGCAGCCACTCTGTTTCTGCTTATGGGAGTTCTACCTTTGGTTTTATCCAGAGGACATGACTATGGAGAAGCTCTAAGCAAAAGCATTCTGTTCTTCGAAGCTCAGAGATCCGGTTATCTTCCCGGTAATCAAAGAGTTAACTGGAGAGGAAACTCGGGCCTCCTCGATGGCAAAACCAATGGGGTGGATCTGGTGGGAGGGTATTATGATGCAGGGGATAACGTGAAGTT...

Protein

Download Protein FASTA

621 aa · LXL04_029526|LXL04_029526|OH1004|PROTEIN

MENLAGFCSMAATLFLLMGVLPLVLSRGHDYGEALSKSILFFEAQRSGYLPGNQRVNWRGNSGLLDGKTNGVDLVGGYYDAGDNVKFGLPMAFTVTMMSWSIMEYGSQMGASGELTHAMEAVKWGTDYLIKAHPEPHALYGEVGDGNTDHYCWQRPEDMTTSRNAYRIDESNPGSDLAGETAAAMAAASIIFRRSNPAYSRELLTHAYQLFDFADKYRGKYDSSITVAQKYYRSVSGYADELLWAAAWMYKATSNKYYLD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_029526`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_029526

Location Chr06:93008698-93012878 (-)

Description Similar to At1g64390: Endoglucanase 6

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g64390`	Endoglucanase 6.	No verified direct reference in this release
`At4g11050`	Endoglucanase 19.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0220100`	Hydrolyzes 1,4-beta-glycosyl linkages of 1,4-beta-glucans and 1,3-1,4-beta-glucans.	No verified direct reference in this release
`Os05g0212300`	Endoglucanase 15.	No verified direct reference in this release
`Os01g0219600`	Endoglucanase 1.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_029526 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0030245 cellulose catabolic process Biological Process

GO:0071555 cell wall organization Biological Process

GO:0005576 extracellular region Cellular Component

GO:0008810 cellulase activity Molecular Function

GO:0030246 carbohydrate binding Molecular Function

KEGG gene cross-reference

ath:AT1G64390

ath:AT4G11050

dosa:Os01g0219600

dosa:Os01g0220100

dosa:Os05g0212300

osa:4324641

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.444

Rank 1 · LXL04_029526 · OH-1004

Cell membrane0.290

Rank 2 · LXL04_029526 · OH-1004

Lysosome / Vacuole0.149

Rank 3 · LXL04_029526 · OH-1004

Cytoplasm0.121

Rank 4 · LXL04_029526 · OH-1004

Endoplasmic reticulum0.093

Rank 5 · LXL04_029526 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00759.26Glyco_hydro_931-490 aa

PF09478.17CBM49528-606 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_029526	`PF00759.26`	Glyco_hydro_9	31	490	1.5e-166	555.8
LXL04_029526	`PF09478.17`	CBM49	528	606	6.1e-28	97.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q42059`	Arabidopsis thaliana	Endoglucanase 6	76.230%	Swiss-Prot	strong database homology
`Q8L7I0`	Arabidopsis thaliana	Endoglucanase 19	72.968%	Swiss-Prot	strong database homology
`Q5NAT0`	Oryza sativa subsp. japonica	Endoglucanase 2	61.699%	Swiss-Prot	strong database homology
`Q6L4I2`	Oryza sativa subsp. japonica	Endoglucanase 15	61.836%	Swiss-Prot	strong database homology
`Q5NAT8`	Oryza sativa subsp. japonica	Endoglucanase 1	60.755%	Swiss-Prot	strong database homology

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