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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_029207
Reference: OH-1004 Chr: Chr06 Coordinates: 83756550-83761010 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2130 bp · LXL04_029207|LXL04_029207|OH1004|cDNA

ATGTCTCATATCAGAGAGTTTGAACACCTCAAAATAACGCTAGAAGCTATAAAATCTGCAACCAACAACTTTGCTCCTGAGAATTGTATAGGGAGAGGAGGATTTGGGAATGTGTATAAAGGAGAAATTGTCCATTCCAGGGGCCGTTCCATGGTTGCTTTTAAGCGCTTAGACTGTGCATTTGGGCAAGGAAACCCAGAGTTTTGGAAGGAAATCACAATGCTATCGATTTACAAGCATACAAATTTGGTTTGTCTTTT...

CDS

Download CDS FASTA

2130 bp · LXL04_029207|LXL04_029207|OH1004|CDS

ATGTCTCATATCAGAGAGTTTGAACACCTCAAAATAACGCTAGAAGCTATAAAATCTGCAACCAACAACTTTGCTCCTGAGAATTGTATAGGGAGAGGAGGATTTGGGAATGTGTATAAAGGAGAAATTGTCCATTCCAGGGGCCGTTCCATGGTTGCTTTTAAGCGCTTAGACTGTGCATTTGGGCAAGGAAACCCAGAGTTTTGGAAGGAAATCACAATGCTATCGATTTACAAGCATACAAATTTGGTTTGTCTTTT...

Protein

Download Protein FASTA

709 aa · LXL04_029207|LXL04_029207|OH1004|PROTEIN

MSHIREFEHLKITLEAIKSATNNFAPENCIGRGGFGNVYKGEIVHSRGRSMVAFKRLDCAFGQGNPEFWKEITMLSIYKHTNLVCLLGFCDESDEKILVYEYASKRSLDLHLDSNDLTWTQRLKICIGVARGLSYLHNSETNVRVLHRDIKSSNILLDENWNAKLSDFGLSKFARADKFTFLFTCAVGTLGYCDPLYAETGFLTKESDIYSLGVVLFEVLCGRLCIDKKDGHPLTGLARHCYELNKVDSIIFSSMVDEIN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_029207
TK1151 IDTkA07G284760
OH-1004 IDLXL04_029207
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.900
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_029207
LocationChr06:83756550-83761010 (+)
DescriptionSimilar to TPR2: Protein TOPLESS-RELATED PROTEIN 2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g27030 Transcriptional corepressor. No verified direct reference in this release
At3g16830 Transcriptional corepressor. No verified direct reference in this release
At1g15750 Transcriptional corepressor. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os08g0162100 Transcriptional corepressor involved in branch formation regulation, presumably by suppressing primary branch formation and promoting secondary branch formation.
OsLIS-L1 encoding a lissencephaly type-1-like protein with WD40 repeats is required for plant height and male gametophyte formation in rice.2012 · DOI: 10.1007/s00425-011-1532-7
Os01g0254100 Probable downstream regulator of strigolactones signaling. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_029207 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0009733 response to auxin Biological Process
GO:0009867 jasmonic acid mediated signaling pathway Biological Process
GO:0010051 xylem and phloem pattern formation Biological Process
GO:0010072 primary shoot apical meristem specification Biological Process
GO:0010229 inflorescence development Biological Process
GO:0045892 negative regulation of DNA-templated transcription Biological Process
GO:0062208 positive regulation of pattern recognition receptor signaling pathway Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005886 plasma membrane Cellular Component
KEGG gene cross-reference
ath:AT1G15750
ath:AT3G16830
ath:AT5G27030
dosa:Os01g0254100
dosa:Os08g0162100
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.452
Rank 1 · LXL04_029207 · OH-1004
Nucleus0.323
Rank 2 · LXL04_029207 · OH-1004
Cell membrane0.307
Rank 3 · LXL04_029207 · OH-1004
Lysosome / Vacuole0.068
Rank 4 · LXL04_029207 · OH-1004
Golgi apparatus0.061
Rank 5 · LXL04_029207 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase27-290 aa
PF07714.24PK_Tyr_Ser-Thr28-292 aa
PF24814.2WD40_Prp19397-584 aa
PF24807.2WD40_CDC20-Fz402-539 aa
PF24817.2WD40_WDHD1_1st412-632 aa
PF25174.2Beta-prop_THOC3412-492 aa
PF23381.2Beta-prop_IFT122_1st413-533 aa
PF24796.2WDR55415-535 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_029207PF00069.32Pkinase272902.4e-42145.9
LXL04_029207PF07714.24PK_Tyr_Ser-Thr282924.3e-38131.8
LXL04_029207PF24814.2WD40_Prp193975847.8e-1865.2
LXL04_029207PF24807.2WD40_CDC20-Fz4025398.2e-1452.3
LXL04_029207PF24817.2WD40_WDHD1_1st4126321.1e-1868.1
LXL04_029207PF25174.2Beta-prop_THOC34124928.2e-1452.0
LXL04_029207PF23381.2Beta-prop_IFT122_1st4135331.4e-1971.2
LXL04_029207PF24796.2WDR554155355.1e-0833.0
LXL04_029207PF25173.2Beta-prop_WDR3_1st4185352.1e-29103.2
LXL04_029207PF23414.2Beta-prop_EML_24195391.5e-1248.2
LXL04_029207PF25168.2Beta-prop_WDR36-Utp21_2nd4195361.5e-0938.3
LXL04_029207PF25175.2Beta-prop_WDR54206272.8e-1660.3
LXL04_029207PF25391.2WD40_Gbeta4255755.5e-0626.3
LXL04_029207PF25172.2Beta-prop_WDR3_2nd4265401.1e-1145.3
LXL04_029207PF25173.2Beta-prop_WDR3_1st4355372.1e-29103.2
LXL04_029207PF25171.2Beta-prop_WDR36-Utp21_1st4365351.9e-1144.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q84JM4Arabidopsis thalianaTopless-related protein 357.703%Swiss-Protmoderate database homology
Q9LRZ0Arabidopsis thalianaTopless-related protein 248.513%Swiss-Protmoderate database homology
Q94AI7Arabidopsis thalianaProtein TOPLESS53.933%Swiss-Protmoderate database homology
Q0J7U6Oryza sativa subsp. japonicaProtein TOPLESS-RELATED PROTEIN 262.740%Swiss-Protmoderate database homology
Q5NBT9Oryza sativa subsp. japonicaProtein TPR155.053%Swiss-Protmoderate database homology

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