LXL04_028999 | RubberDandelionOmics

Gene overview

LXL04_028999

Reference: OH-1004 Chr: Chr06 Coordinates: 77423852-77425468 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1617 bp · LXL04_028999|LXL04_028999|OH1004|cDNA

ATGATAGGTATGAATCGGAAAAGTAGTAGTCCTGGATTAAAAGATGTTCCGGAGTTGATGCACCATATACAATCGCTATTGCCGGTTAAAGAAGCGGCCCGCACCGGTGTCTTGTCCAAGTCATGGCTACACGCTTGGTCTACCATCCCTAACCTCAGGTTTCATGAGCACATGAAGTTGGCGGACGTTGACCGTAGTCTGGTAAGATATCTCCGTGACGACATACCAATTGAAAGGTTTGAACTTAAGATCGATATCCA...

CDS

Download CDS FASTA

1617 bp · LXL04_028999|LXL04_028999|OH1004|CDS

ATGATAGGTATGAATCGGAAAAGTAGTAGTCCTGGATTAAAAGATGTTCCGGAGTTGATGCACCATATACAATCGCTATTGCCGGTTAAAGAAGCGGCCCGCACCGGTGTCTTGTCCAAGTCATGGCTACACGCTTGGTCTACCATCCCTAACCTCAGGTTTCATGAGCACATGAAGTTGGCGGACGTTGACCGTAGTCTGGTAAGATATCTCCGTGACGACATACCAATTGAAAGGTTTGAACTTAAGATCGATATCCA...

Protein

Download Protein FASTA

538 aa · LXL04_028999|LXL04_028999|OH1004|PROTEIN

MIGMNRKSSSPGLKDVPELMHHIQSLLPVKEAARTGVLSKSWLHAWSTIPNLRFHEHMKLADVDRSLVRYLRDDIPIERFELKIDIQNQKSAALAQKWIRSVATKTSLKELSLTISPSGASLHLPEELLSGENLIKITVSASQGPKPNSIWMTTTHHPKCVTSLRELHFSCVTVSEQVLHDIFSSCSSLVKIELILCSQGLNTIKVKNLHCLRQLQIVTSDGGSTAFEISHLKSLRMLGCNVRMNGRSKRLSIPPLINGH...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_028999`
TK1151 ID	TkA07G260330
OH-1004 ID	LXL04_028999
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	90.000
Protein coverage (%)	TK1151 100.000 / OH-1004 96.468 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_028999

Location Chr06:77423852-77425468 (-)

Description Similar to At3g59230: Putative F-box/LRR-repeat protein At3g59230

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g59230`	Putative F-box/LRR-repeat protein At3g59230.	No verified direct reference in this release
`At3g59200`	F-box/LRR-repeat protein At3g59200.	No verified direct reference in this release
`At1g48400`	F-box/LRR-repeat protein At1g48400.	No verified direct reference in this release
`At5g56410`	Putative FBD-associated F-box protein At5g56410.	No verified direct reference in this release
`At3g26922`	F-box/LRR-repeat protein At3g26922.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_028999 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005634 nucleus Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT1G48400

ath:AT3G26922

ath:AT3G59200

ath:AT3G59230

ath:AT5G56410

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.878

Rank 1 · LXL04_028999 · OH-1004

Cytoplasm0.154

Rank 2 · LXL04_028999 · OH-1004

Cell membrane0.053

Rank 3 · LXL04_028999 · OH-1004

Endoplasmic reticulum0.040

Rank 4 · LXL04_028999 · OH-1004

Plastid0.017

Rank 5 · LXL04_028999 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23622.2LRR_At1g61320_AtMIF177-219 aa

PF24758.2LRR_At5g5637096-227 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_028999	`PF23622.2`	LRR_At1g61320_AtMIF1	77	219	3.6e-09	37.2
LXL04_028999	`PF24758.2`	LRR_At5g56370	96	227	3.4e-14	53.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LX48`	Arabidopsis thaliana	Putative F-box/LRR-repeat protein At3g59230	26.549%	Swiss-Prot	weak database homology
`Q9LX51`	Arabidopsis thaliana	F-box/LRR-repeat protein At3g59200	25.641%	Swiss-Prot	weak database homology
`Q56XW8`	Arabidopsis thaliana	F-box/LRR-repeat protein At1g48400	29.936%	Swiss-Prot	weak database homology
`Q9FM90`	Arabidopsis thaliana	Putative FBD-associated F-box protein At5g56410	25.126%	Swiss-Prot	weak database homology
`Q9LJF8`	Arabidopsis thaliana	F-box/LRR-repeat protein At3g26922	27.027%	Swiss-Prot	weak database homology

JBrowse

View in Genome Browser

Gene Card