LXL04_028750 | RubberDandelionOmics

Gene overview

LXL04_028750

Reference: OH-1004 Chr: Chr06 Coordinates: 60779098-60785630 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2907 bp · LXL04_028750|LXL04_028750|OH1004|cDNA

ATGGGCTCAAGAAATGGACAGTTGGTTGTAATCATTTTCATACAAATTTGGATAGCAACAGCTCAGAATCGAGATGGTAAGTTCAATTCTTTCAGTGCGGTTCTACAGGCTCTCAAGGAAGCTTGGCAGAAGAGTGTACCACCAAGCTGGAATGTTGGCTCAGACCCATGTCGTGATAGTTGGGAAGGCATCATCTGCACCAATTCACGTGTCACTTCCATATATTTGACAAGCATGCAATTAACTGGTGGGCTCCCCGG...

CDS

Download CDS FASTA

2907 bp · LXL04_028750|LXL04_028750|OH1004|CDS

ATGGGCTCAAGAAATGGACAGTTGGTTGTAATCATTTTCATACAAATTTGGATAGCAACAGCTCAGAATCGAGATGGTAAGTTCAATTCTTTCAGTGCGGTTCTACAGGCTCTCAAGGAAGCTTGGCAGAAGAGTGTACCACCAAGCTGGAATGTTGGCTCAGACCCATGTCGTGATAGTTGGGAAGGCATCATCTGCACCAATTCACGTGTCACTTCCATATATTTGACAAGCATGCAATTAACTGGTGGGCTCCCCGG...

Protein

Download Protein FASTA

968 aa · LXL04_028750|LXL04_028750|OH1004|PROTEIN

MGSRNGQLVVIIFIQIWIATAQNRDGKFNSFSAVLQALKEAWQKSVPPSWNVGSDPCRDSWEGIICTNSRVTSIYLTSMQLTGGLPGDIGQLSELQILALSYNPGLTGSLTPAIGNLKKLTNLVLVGCSFSGPIPDTLGNLERLIILSLNSNRFTGSIPASIGNLKNLYWLDLTENQLTGSLPVSNGTIPGLDMLTHAKHFHLGDNQLSGNIPPRLFNSNMSLLHLLFENNKFTGSIPSTLGLVRSLEVVRLDRNSLTGI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_028750`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_028750

Location Chr06:60779098-60785630 (+)

Description Similar to At5g49770: Probable leucine-rich repeat receptor-like protein kinase At5g49770

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g49760`	Leucine-rich repeat receptor protein kinase that acts as sensor of extracellular hydrogen peroxide.	Hydrogen peroxide sensor HPCA1 is an LRR receptor kinase in Arabidopsis.2020 · DOI: 10.1038/s41586-020-2032-3
`At5g49770`	Probable leucine-rich repeat receptor-like protein kinase At5g49770.	No verified direct reference in this release
`At1g06840`	Probable LRR receptor-like serine/threonine-protein kinase At1g06840.	No verified direct reference in this release
`At5g37450`	Probable LRR receptor-like serine/threonine-protein kinase At5g37450.	No verified direct reference in this release
`At3g53590`	Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At3g53590.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_028750 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009593 detection of chemical stimulus Biological Process

GO:0045088 regulation of innate immune response Biological Process

GO:0046777 protein autophosphorylation Biological Process

GO:0090333 regulation of stomatal closure Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009536 plastid Cellular Component

GO:0004672 protein kinase activity Molecular Function

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0004675 transmembrane receptor protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT1G06840

ath:AT5G37450

ath:AT5G49760

ath:AT5G49770

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.870

Rank 1 · LXL04_028750 · OH-1004

Endoplasmic reticulum0.074

Rank 2 · LXL04_028750 · OH-1004

Cytoplasm0.071

Rank 3 · LXL04_028750 · OH-1004

Nucleus0.041

Rank 4 · LXL04_028750 · OH-1004

Lysosome / Vacuole0.028

Rank 5 · LXL04_028750 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08263.18LRRNT_234-67 aa

PF23598.2LRR_1483-150 aa

PF13855.13LRR_8119-178 aa

PF23598.2LRR_14156-363 aa

PF13855.13LRR_8245-304 aa

PF13855.13LRR_8310-352 aa

PF00069.32Pkinase644-909 aa

PF07714.24PK_Tyr_Ser-Thr647-911 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_028750	`PF08263.18`	LRRNT_2	34	67	1e-06	29.6
LXL04_028750	`PF23598.2`	LRR_14	83	150	1.2e-12	48.0
LXL04_028750	`PF13855.13`	LRR_8	119	178	1.6e-20	73.3
LXL04_028750	`PF23598.2`	LRR_14	156	363	1.2e-12	48.0
LXL04_028750	`PF13855.13`	LRR_8	245	304	1.6e-20	73.3
LXL04_028750	`PF13855.13`	LRR_8	310	352	1.6e-20	73.3
LXL04_028750	`PF00069.32`	Pkinase	644	909	7.3e-43	147.6
LXL04_028750	`PF07714.24`	PK_Tyr_Ser-Thr	647	911	3e-46	158.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8GZ99`	Arabidopsis thaliana	Leucine-rich repeat receptor protein kinase HPCA1	55.852%	Swiss-Prot	strong database homology
`Q9LT96`	Arabidopsis thaliana	Probable leucine-rich repeat receptor-like protein kinase At5g49770	52.878%	Swiss-Prot	strong database homology
`C0LGD7`	Arabidopsis thaliana	Probable LRR receptor-like serine/threonine-protein kinase At1g06840	35.512%	Swiss-Prot	moderate database homology
`C0LGU1`	Arabidopsis thaliana	Probable LRR receptor-like serine/threonine-protein kinase At5g37450	34.845%	Swiss-Prot	moderate database homology
`Q9LFG1`	Arabidopsis thaliana	Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At3g53590	33.952%	Swiss-Prot	moderate database homology

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