LXL04_028301 | RubberDandelionOmics

Gene overview

LXL04_028301

Reference: OH-1004 Chr: Chr06 Coordinates: 37140010-37143131 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2934 bp · LXL04_028301|LXL04_028301|OH1004|cDNA

ATGAGGGCAGGGTTGAGTACGATCCTTCAGACCTTAACGCCGGAAGCGGCGAGTGTTTTGAATCATTCAATAGCGGAAGCCGGCCGTCGAAATCACAACCAAACGACGCCGCTCCATGTGGCAGCAACGCTTCTGTCCGCTCCGACGGGGTTCCTCCGGCAAGCTTGCATACGGTCTCACCCGAATTCCTCACACCCTCTTCAGTGCCGGGCACTCGAGCTCTGTTTCAGCGTAGCGTTAGAGCGGCTACCTTCAGCTAC...

CDS

Download CDS FASTA

2934 bp · LXL04_028301|LXL04_028301|OH1004|CDS

ATGAGGGCAGGGTTGAGTACGATCCTTCAGACCTTAACGCCGGAAGCGGCGAGTGTTTTGAATCATTCAATAGCGGAAGCCGGCCGTCGAAATCACAACCAAACGACGCCGCTCCATGTGGCAGCAACGCTTCTGTCCGCTCCGACGGGGTTCCTCCGGCAAGCTTGCATACGGTCTCACCCGAATTCCTCACACCCTCTTCAGTGCCGGGCACTCGAGCTCTGTTTCAGCGTAGCGTTAGAGCGGCTACCTTCAGCTAC...

Protein

Download Protein FASTA

977 aa · LXL04_028301|LXL04_028301|OH1004|PROTEIN

MRAGLSTILQTLTPEAASVLNHSIAEAGRRNHNQTTPLHVAATLLSAPTGFLRQACIRSHPNSSHPLQCRALELCFSVALERLPSATSSPAVTEPPVSNALMAALKRAQAHQRRGCPEQQQQPLLAVKVELEQLIISILDDPSVSRVMREASFSSPAVKATIEQSLNSSNVSGIGFRPTPSPTTPVPIPINRNLYINPRLQRNDDTAVSSSSTNIYLNPRLQQQHGNYSFSQSGHQRIDDAKRVMEIMSKSKKKNPILVG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_028301`
TK1151 ID	TkA07G140530
OH-1004 ID	LXL04_028301
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.300
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_028301

Location Chr06:37140010-37143131 (-)

Description Similar to SMAX1: Protein SUPPRESSOR OF MAX2 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g57710`	Probable component of a transcriptional corepressor complex that acts downstream of MAX2 to negatively regulate karrikins/strigolactone responses.	SUPPRESSOR OF MORE AXILLARY GROWTH2 1 controls seed germination and seedling development in Arabidopsis.2013 · DOI: 10.1104/pp.113.221259 SMAX1-LIKE/D53 Family Members Enable Distinct MAX2-Dependent Responses to Strigolactones and Karrikins in Arabidopsis.2015 · DOI: 10.1105/tpc.15.00562 Functional redundancy in the control of seedling growth by the karrikin signaling pathway.2016 · DOI: 10.1007/s00425-015-2458-2
`At4g30350`	Probable component of a transcriptional corepressor complex that acts specifically in the karrikin pathway.	Functional redundancy in the control of seedling growth by the karrikin signaling pathway.2016 · DOI: 10.1007/s00425-015-2458-2
`At3g52490`	May function in a transcriptional corepressor complex.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os08g0250900`	May act downstream of MAX2 to negatively regulate karrikins/strigolactone responses.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_028301 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0007623 circadian rhythm Biological Process

GO:0009845 seed germination Biological Process

GO:0080167 response to karrikin Biological Process

GO:0090351 seedling development Biological Process

GO:1902347 response to strigolactone Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005524 ATP binding Molecular Function

GO:0016887 ATP hydrolysis activity Molecular Function

GO:0044183 protein folding chaperone Molecular Function

KEGG gene cross-reference

ath:AT3G52490

ath:AT4G30350

ath:AT5G57710

dosa:Os08g0250900

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.861

Rank 1 · LXL04_028301 · OH-1004

Cytoplasm0.150

Rank 2 · LXL04_028301 · OH-1004

Cell membrane0.057

Rank 3 · LXL04_028301 · OH-1004

Endoplasmic reticulum0.043

Rank 4 · LXL04_028301 · OH-1004

Plastid0.035

Rank 5 · LXL04_028301 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02861.26Clp_N12-113 aa

PF23569.2NBD_SMAX1237-412 aa

PF07724.21AAA_2648-778 aa

PF26587.1AAA_lid_SMAX1876-955 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_028301	`PF02861.26`	Clp_N	12	113	2.8e-09	38.0
LXL04_028301	`PF23569.2`	NBD_SMAX1	237	412	6.8e-28	98.6
LXL04_028301	`PF07724.21`	AAA_2	648	778	4.1e-11	43.9
LXL04_028301	`PF26587.1`	AAA_lid_SMAX1	876	955	3.3e-19	69.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FHH2`	Arabidopsis thaliana	Protein SUPPRESSOR OF MAX2 1	47.243%	Swiss-Prot	moderate database homology
`Q9M0C5`	Arabidopsis thaliana	Protein SMAX1-LIKE 2	44.564%	Swiss-Prot	moderate database homology
`Q9SVD0`	Arabidopsis thaliana	Protein SMAX1-LIKE 3	31.707%	Swiss-Prot	moderate database homology
`Q6Z517`	Oryza sativa subsp. japonica	Protein SMAX1-like	39.110%	Swiss-Prot	moderate database homology

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