LXL04_028090 | RubberDandelionOmics

Gene overview

LXL04_028090

Reference: OH-1004 Chr: Chr06 Coordinates: 30978378-30981493 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1527 bp · LXL04_028090|LXL04_028090|OH1004|cDNA

ATGGTATCATTCCAGCATAAAACCCTTTCTCTCTCCTCTATTTTAGTACCCGATTCCCTTGTGTCTTTGTCAATTGTCGACATAAGTTCTAATTCTCCGCCGGCAACGACCTGTATAAACTTTCCGTTGTATGTATATCGGCGGTGGTGGAGGATGGTGATGACGGTGGCGTCGCCTAAAAACTCGTTAAAGACAGTGTTCGAGAGAGTCGGAGTTTATGGATTTGGCGGCGGGAGTAGCAACAGGCAGAAAAGAGTAAG...

CDS

Download CDS FASTA

1527 bp · LXL04_028090|LXL04_028090|OH1004|CDS

ATGGTATCATTCCAGCATAAAACCCTTTCTCTCTCCTCTATTTTAGTACCCGATTCCCTTGTGTCTTTGTCAATTGTCGACATAAGTTCTAATTCTCCGCCGGCAACGACCTGTATAAACTTTCCGTTGTATGTATATCGGCGGTGGTGGAGGATGGTGATGACGGTGGCGTCGCCTAAAAACTCGTTAAAGACAGTGTTCGAGAGAGTCGGAGTTTATGGATTTGGCGGCGGGAGTAGCAACAGGCAGAAAAGAGTAAG...

Protein

Download Protein FASTA

508 aa · LXL04_028090|LXL04_028090|OH1004|PROTEIN

MVSFQHKTLSLSSILVPDSLVSLSIVDISSNSPPATTCINFPLYVYRRWWRMVMTVASPKNSLKTVFERVGVYGFGGGSSNRQKRVRYEIHEEDHDNMEMVQLGANRTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYKIFVKDVWKEYTGWPLNDMENQYKFMVKHVQLWSVAFHGTSPRWIHGVYLAAIAAFYAKEVEAGLMEYKPDIIISVHPMMQHIPLWVLKWQGLQKKVIFVTVITDLNTCHRTWFHPRVK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_028090`
TK1151 ID	TkA07G120500
OH-1004 ID	LXL04_028090
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_028090

Location Chr06:30978378-30981493 (-)

Description Similar to MGD2: Monogalactosyldiacylglycerol synthase 2, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g20410`	Involved in the synthesis of monogalactosyldiacylglycerol, the major structural component of photosynthetic membranes and in the chloroplast envelope biogenesis.	Two types of MGDG synthase genes, found widely in both 16:3 and 18:3 plants, differentially mediate galactolipid syntheses in photosynthetic and nonphotosynthetic tissues in Arabidopsis thaliana.2001 · DOI: 10.1073/pnas.181331498 Type-B monogalactosyldiacylglycerol synthases are involved in phosphate starvation-induced lipid remodeling, and are crucial for low-phosphate adaptation.2009 · DOI: 10.1111/j.1365-313x.2008.03692.x Lipid remodeling under acidic conditions and its interplay with low Pi stress in Arabidopsis.2019 · DOI: 10.1007/s11103-019-00891-1
`At2g11810`	Involved in the synthesis of monogalactosyldiacylglycerol, the major structural component of photosynthetic membranes and in the chloroplast envelope biogenesis.	Two types of MGDG synthase genes, found widely in both 16:3 and 18:3 plants, differentially mediate galactolipid syntheses in photosynthetic and nonphotosynthetic tissues in Arabidopsis thaliana.2001 · DOI: 10.1073/pnas.181331498 Type-B monogalactosyldiacylglycerol synthases are involved in phosphate starvation-induced lipid remodeling, and are crucial for low-phosphate adaptation.2009 · DOI: 10.1111/j.1365-313x.2008.03692.x

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0802700`	Involved in the synthesis of the major structural component of photosynthetic membranes.	No verified direct reference in this release
`Os08g0299400`	Involved in the synthesis of the major structural component of photosynthetic membranes.	No verified direct reference in this release
`UniProt: A2YTP9`	Involved in the synthesis of the major structural component of photosynthetic membranes.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_028090 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006631 fatty acid metabolic process Biological Process

GO:0009247 glycolipid biosynthetic process Biological Process

GO:0016036 cellular response to phosphate starvation Biological Process

GO:0019374 galactolipid metabolic process Biological Process

GO:0019375 galactolipid biosynthetic process Biological Process

GO:0009507 chloroplast Cellular Component

GO:0009707 chloroplast outer membrane Cellular Component

GO:0031969 chloroplast membrane Cellular Component

GO:0035250 UDP-galactosyltransferase activity Molecular Function

GO:0046509 1,2-diacylglycerol 3-beta-galactosyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT2G11810

ath:AT5G20410

dosa:Os02g0802700

dosa:Os08g0299400

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.939

Rank 1 · LXL04_028090 · OH-1004

Cytoplasm0.042

Rank 2 · LXL04_028090 · OH-1004

Mitochondrion0.034

Rank 3 · LXL04_028090 · OH-1004

Cell membrane0.034

Rank 4 · LXL04_028090 · OH-1004

Peroxisome0.031

Rank 5 · LXL04_028090 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06925.18MGDG_synth122-290 aa

PF04101.23Glyco_tran_28_C317-415 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_028090	`PF06925.18`	MGDG_synth	122	290	2.4e-62	210.7
LXL04_028090	`PF04101.23`	Glyco_tran_28_C	317	415	3.2e-09	37.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O82730`	Arabidopsis thaliana	Monogalactosyldiacylglycerol synthase 2, chloroplastic	80.523%	Swiss-Prot	strong database homology
`Q9SI93`	Arabidopsis thaliana	Monogalactosyldiacylglycerol synthase 3, chloroplastic	72.907%	Swiss-Prot	strong database homology
`Q0DWQ1`	Oryza sativa subsp. japonica	Probable monogalactosyldiacylglycerol synthase 3, chloroplastic	78.250%	Swiss-Prot	strong database homology
`Q6UTZ2`	Oryza sativa subsp. japonica	Probable monogalactosyldiacylglycerol synthase 2, chloroplastic	72.613%	Swiss-Prot	strong database homology
`A2YTP9`	Oryza sativa subsp. indica	Probable monogalactosyldiacylglycerol synthase 2, chloroplastic	72.613%	Swiss-Prot	strong database homology

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