LXL04_028053 | RubberDandelionOmics

Gene overview

LXL04_028053

Reference: OH-1004 Chr: Chr06 Coordinates: 29738538-29742506 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1476 bp · LXL04_028053|LXL04_028053|OH1004|cDNA

ATGGTTTCTAATGGCGGAGTAAGTTTACAAAGCAACAGCTATAGTAGTTCTCAAACTATTTGTGATCTTCAAATCAGTGGGGATAGAAATTTGGATGTTGCGTGTCTTGCAAGCCTTGTGAAAAAGATGAAAAGAGTGACAAAAAAGGTCGGGAAGTATGAGCTTGGGAGAACCATTGGTGAAGGCACATTTGCAAAGGTTAAATTTGCAAAAAATACAGAGACTGGGGAGTCAGTTGCCATTAAAGTTCTTCCAAAGAG...

CDS

Download CDS FASTA

1476 bp · LXL04_028053|LXL04_028053|OH1004|CDS

ATGGTTTCTAATGGCGGAGTAAGTTTACAAAGCAACAGCTATAGTAGTTCTCAAACTATTTGTGATCTTCAAATCAGTGGGGATAGAAATTTGGATGTTGCGTGTCTTGCAAGCCTTGTGAAAAAGATGAAAAGAGTGACAAAAAAGGTCGGGAAGTATGAGCTTGGGAGAACCATTGGTGAAGGCACATTTGCAAAGGTTAAATTTGCAAAAAATACAGAGACTGGGGAGTCAGTTGCCATTAAAGTTCTTCCAAAGAG...

Protein

Download Protein FASTA

491 aa · LXL04_028053|LXL04_028053|OH1004|PROTEIN

MVSNGGVSLQSNSYSSSQTICDLQISGDRNLDVACLASLVKKMKRVTKKVGKYELGRTIGEGTFAKVKFAKNTETGESVAIKVLPKRSILKHKMVDQIKREISITKMMRHPNIVRLHEVLSSHTKIYIILEFINGGELFDRIVHKGKLYEQEARDYFQQLIDAVAYCHRKGVYHRDLKVREKPENLLLDSEGKLKVSDFGLSALPQQGVELLYTTCGTPNYIAPEVLSDNGYDGAAADIWSCGVILYVILAGYLPFEESD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_028053`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_028053

Location Chr06:29738538-29742506 (-)

Description Similar to CIPK24: CBL-interacting serine/threonine-protein kinase 24

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g35410`	May regulate intracellular Na⁺/K⁺ homeostasis and salt tolerance.	The Arabidopsis SOS2 protein kinase physically interacts with and is activated by the calcium-binding protein SOS3.2000 · DOI: 10.1073/pnas.97.7.3735 Regulation of SOS1, a plasma membrane Na+/H+ exchanger in Arabidopsis thaliana, by SOS2 and SOS3.2002 · DOI: 10.1073/pnas.122224699 The protein kinase SOS2 activates the Arabidopsis H(+)/Ca(2+) antiporter CAX1 to integrate calcium transport and salt tolerance.2004 · DOI: 10.1074/jbc.m309084200
`At4g24400`	CIPK serine-threonine protein kinases interact with CBL proteins.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os06g0606000`	May regulate intracellular Na⁺/K⁺ homeostasis and salt tolerance.	Conservation of the salt overly sensitive pathway in rice.2007 · DOI: 10.1104/pp.106.092635
`Os01g0536000`	CIPK serine-threonine protein kinases interact with CBL proteins.	No verified direct reference in this release
`Os07g0150700`	CIPK serine-threonine protein kinases interact with CBL proteins.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_028053 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006468 protein phosphorylation Biological Process

GO:0007165 signal transduction Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009749 response to glucose Biological Process

GO:0010167 response to nitrate Biological Process

GO:0046777 protein autophosphorylation Biological Process

GO:0048364 root development Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0009705 plant-type vacuole membrane Cellular Component

GO:0004672 protein kinase activity Molecular Function

GO:0004674 protein serine/threonine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT4G24400

ath:AT5G35410

dosa:Os01g0536000

dosa:Os06g0606000

dosa:Os07g0150700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.522

Rank 1 · LXL04_028053 · OH-1004

Nucleus0.368

Rank 2 · LXL04_028053 · OH-1004

Cell membrane0.230

Rank 3 · LXL04_028053 · OH-1004

Lysosome / Vacuole0.062

Rank 4 · LXL04_028053 · OH-1004

Golgi apparatus0.060

Rank 5 · LXL04_028053 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase53-310 aa

PF07714.24PK_Tyr_Ser-Thr54-302 aa

PF14531.13Kinase-like150-298 aa

PF03822.21NAF352-411 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_028053	`PF00069.32`	Pkinase	53	310	5e-73	246.4
LXL04_028053	`PF07714.24`	PK_Tyr_Ser-Thr	54	302	7.2e-35	121.3
LXL04_028053	`PF14531.13`	Kinase-like	150	298	4.4e-07	30.2
LXL04_028053	`PF03822.21`	NAF	352	411	1.2e-18	67.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LDI3`	Arabidopsis thaliana	CBL-interacting serine/threonine-protein kinase 24	70.199%	Swiss-Prot	strong database homology
`Q9STV4`	Arabidopsis thaliana	CBL-interacting serine/threonine-protein kinase 8	64.516%	Swiss-Prot	strong database homology
`Q69Q47`	Oryza sativa subsp. japonica	CBL-interacting protein kinase 24	69.438%	Swiss-Prot	strong database homology
`Q5JLD8`	Oryza sativa subsp. japonica	CBL-interacting protein kinase 8	63.934%	Swiss-Prot	strong database homology
`Q6ZLP5`	Oryza sativa subsp. japonica	CBL-interacting protein kinase 23	58.810%	Swiss-Prot	strong database homology

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