LXL04_027977 | RubberDandelionOmics

Gene overview

LXL04_027977

Reference: OH-1004 Chr: Chr06 Coordinates: 28045510-28048924 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1581 bp · LXL04_027977|LXL04_027977|OH1004|cDNA

ATGAACTTTGCGGGTTCTCCAAGTTGTGCAATCCGGAATCAAGTCTGGACAGATTCTGGTATGCGGGTACATCCACACGGTTCTGCCTCCATGTATAAACGGATGCCTTCTAAGGACTATACAAATTCAGTTGAACTAGAAGATGGTTCTGAACCTTTGCAGGATGATATGGTCCAAGAATCTACAGATCCATCTCCAAGACATTCTCTACCTCATGTACTTGTGGCATCCTTAGTCTCTTTCCTATTTGGCTACCATCT...

CDS

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1581 bp · LXL04_027977|LXL04_027977|OH1004|CDS

ATGAACTTTGCGGGTTCTCCAAGTTGTGCAATCCGGAATCAAGTCTGGACAGATTCTGGTATGCGGGTACATCCACACGGTTCTGCCTCCATGTATAAACGGATGCCTTCTAAGGACTATACAAATTCAGTTGAACTAGAAGATGGTTCTGAACCTTTGCAGGATGATATGGTCCAAGAATCTACAGATCCATCTCCAAGACATTCTCTACCTCATGTACTTGTGGCATCCTTAGTCTCTTTCCTATTTGGCTACCATCT...

Protein

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526 aa · LXL04_027977|LXL04_027977|OH1004|PROTEIN

MNFAGSPSCAIRNQVWTDSGMRVHPHGSASMYKRMPSKDYTNSVELEDGSEPLQDDMVQESTDPSPRHSLPHVLVASLVSFLFGYHLGVVNEPLESISHDLGFSGDSLAEGVFFIYDLMKLVCIVNEGLVVSTCLGGAFLGSLFSGLIADGVGRRRAFQLCALPMIIGASCSATTNNLTGMLVGRFIVGIGLGIGPPVASLYITEVSPPAVRGTYGSFIQISTCLGLMGALLIGIPVKTVPGWWRICFWLSTIPSTILAL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_027977`
TK1151 ID	TkA07G110480
OH-1004 ID	LXL04_027977
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	95.500
Protein coverage (%)	TK1151 100.000 / OH-1004 96.198 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_027977

Location Chr06:28045510-28048924 (-)

Description Similar to At1g67300: Probable plastidic glucose transporter 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g67300`	May be involved in the efflux of glucose towards the cytosol.	No verified direct reference in this release
`At1g79820`	May be involved in the efflux of glucose towards the cytosol.	No verified direct reference in this release
`At1g05030`	May be involved in the efflux of glucose towards the cytosol.	No verified direct reference in this release
`At5g16150`	May be involved in the efflux of glucose towards the cytosol.	No verified direct reference in this release
`At1g75220`	Sugar transporter.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_027977 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0008643 carbohydrate transport Biological Process

GO:0010030 positive regulation of seed germination Biological Process

GO:0015749 monosaccharide transmembrane transport Biological Process

GO:0042593 glucose homeostasis Biological Process

GO:0055085 transmembrane transport Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005768 endosome Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005802 trans-Golgi network Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT1G05030

ath:AT1G67300

ath:AT1G75220

ath:AT1G79820

ath:AT5G16150

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.386

Rank 1 · LXL04_027977 · OH-1004

Golgi apparatus0.178

Rank 2 · LXL04_027977 · OH-1004

Cell membrane0.167

Rank 3 · LXL04_027977 · OH-1004

Endoplasmic reticulum0.156

Rank 4 · LXL04_027977 · OH-1004

Cytoplasm0.155

Rank 5 · LXL04_027977 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00083.31Sugar_tr73-520 aa

PF07690.22MFS_1128-435 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_027977	`PF00083.31`	Sugar_tr	73	520	2.4e-98	330.7
LXL04_027977	`PF07690.22`	MFS_1	128	435	2.7e-24	86.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FYG3`	Arabidopsis thaliana	Probable plastidic glucose transporter 2	68.127%	Swiss-Prot	strong database homology
`Q2V4B9`	Arabidopsis thaliana	Probable plastidic glucose transporter 3	63.951%	Swiss-Prot	strong database homology
`Q0WVE9`	Arabidopsis thaliana	Probable plastidic glucose transporter 1	43.162%	Swiss-Prot	moderate database homology
`Q56ZZ7`	Arabidopsis thaliana	Plastidic glucose transporter 4	41.929%	Swiss-Prot	moderate database homology
`Q9FRL3`	Arabidopsis thaliana	Sugar transporter ERD6-like 6	33.189%	Swiss-Prot	moderate database homology

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