LXL04_026841 | RubberDandelionOmics

Gene overview

LXL04_026841

Reference: OH-1004 Chr: Chr06 Coordinates: 3649527-3652752 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1041 bp · LXL04_026841|LXL04_026841|OH1004|cDNA

ATGGAGGTCCTGAGATCACCGTTGTCCGCCGCGCAAAAAGGGAAACTGATTTCTGCAGGCTACACTTCCATTGATTTGCTTTCCTCAGTTTCTCCTTCCCATCTTGCACTAGAACTGAAGATTTCAGAATCCGAGGCACTTGAAATTTTAAACACTATATCAGATAGTAACTCAGAAACCACAAGTACCAGTTGCAGTATTGTTAAAGGTGCACAAAGTGCATGGGATATGCTGCAAGAAGAGGAAACCCTTGTACGTAT...

CDS

Download CDS FASTA

1041 bp · LXL04_026841|LXL04_026841|OH1004|CDS

ATGGAGGTCCTGAGATCACCGTTGTCCGCCGCGCAAAAAGGGAAACTGATTTCTGCAGGCTACACTTCCATTGATTTGCTTTCCTCAGTTTCTCCTTCCCATCTTGCACTAGAACTGAAGATTTCAGAATCCGAGGCACTTGAAATTTTAAACACTATATCAGATAGTAACTCAGAAACCACAAGTACCAGTTGCAGTATTGTTAAAGGTGCACAAAGTGCATGGGATATGCTGCAAGAAGAGGAAACCCTTGTACGTAT...

Protein

Download Protein FASTA

346 aa · LXL04_026841|LXL04_026841|OH1004|PROTEIN

MEVLRSPLSAAQKGKLISAGYTSIDLLSSVSPSHLALELKISESEALEILNTISDSNSETTSTSCSIVKGAQSAWDMLQEEETLVRITTSSSDFDNILGGGISCKEVTEIGGVPGIGKTQLGIQLAVNVQIPYDYGGLGGKAIYIDTEGSFMVERALQIAEACGDDMAEYSRLYHKGSSHFHEVKMQPKDFLENIFYFRVCSYTEQIALINYLDKFITDHKDVKVVIIDSITFHFRQDFDDMALRTRLLSGMALKLMKLA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_026841`
TK1151 ID	TkA07G010200
OH-1004 ID	LXL04_026841
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	96.500
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_026841

Location Chr06:3649527-3652752 (-)

Description Similar to RAD51C: DNA repair protein RAD51 homolog 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g45280`	Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA breaks arising during DNA replication or induced by DNA-damaging agents.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_026841 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000707 meiotic DNA recombinase assembly Biological Process

GO:0000722 telomere maintenance via recombination Biological Process

GO:0000724 double-strand break repair via homologous recombination Biological Process

GO:0006281 DNA repair Biological Process

GO:0006310 DNA recombination Biological Process

GO:0007062 sister chromatid cohesion Biological Process

GO:0007066 female meiosis sister chromatid cohesion Biological Process

GO:0007131 reciprocal meiotic recombination Biological Process

GO:0007140 male meiotic nuclear division Biological Process

GO:0007141 male meiosis I Biological Process

GO:0007143 female meiotic nuclear division Biological Process

GO:0007283 spermatogenesis Biological Process

KEGG gene cross-reference

ath:AT2G45280

cge:100689078

ddi:DDB_G0284507

hsa:5889

mmu:114714

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.562

Rank 1 · LXL04_026841 · OH-1004

Cytoplasm0.458

Rank 2 · LXL04_026841 · OH-1004

Mitochondrion0.088

Rank 3 · LXL04_026841 · OH-1004

Peroxisome0.039

Rank 4 · LXL04_026841 · OH-1004

Cell membrane0.030

Rank 5 · LXL04_026841 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08423.18Rad5182-166 aa

PF03796.22DnaB_C87-275 aa

PF06745.20ATPase91-277 aa

PF08423.18Rad51185-335 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_026841	`PF08423.18`	Rad51	82	166	1.7e-43	149.4
LXL04_026841	`PF03796.22`	DnaB_C	87	275	8.8e-08	32.6
LXL04_026841	`PF06745.20`	ATPase	91	277	1.9e-10	41.2
LXL04_026841	`PF08423.18`	Rad51	185	335	1.7e-43	149.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8GXF0`	Arabidopsis thaliana	DNA repair protein RAD51 homolog 3	69.364%	Swiss-Prot	strong database homology

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